View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_low_81 (Length: 378)
Name: NF11745_low_81
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_low_81 |
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| [»] scaffold1063 (1 HSPs) |
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Alignment Details
Target: scaffold1063 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: scaffold1063
Description:
Target: scaffold1063; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 112 - 356
Target Start/End: Original strand, 2855 - 3102
Alignment:
| Q |
112 |
gactaaatctttattatataaatttttccatttataaatgctctattttttgt--tgtataaaatacatgcaaaagctt-atgtgcatgcttttatcaat |
208 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||| |||||||||||||||| |
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| T |
2855 |
gactacatctttattatataaatttttccatttataaatgctctattttttgtgttgtgtaaaatacatgcaaaagctttatgggcatgcttttatcaat |
2954 |
T |
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| Q |
209 |
tcatggatacatccgctgatgagataattacttgaaaaatccttctggttacactttaaagaaagcctatgaaccaaaatgttgctacgatatgttgtag |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
2955 |
tcatggatacatccgctgatgagataattacttgaaaaatccttcgagttatactttaaagaaagcctatgaaccaaaatgctgctaccatatgttgtag |
3054 |
T |
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| Q |
309 |
gtttggatgaagcaataggatactgtgatgcttatggaaagatgccat |
356 |
Q |
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| T |
3055 |
gtttggatgaagcaataggatactgtgatgcttatggaaagatgccat |
3102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 120; Significance: 3e-61; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 134 - 277
Target Start/End: Complemental strand, 6943221 - 6943078
Alignment:
| Q |
134 |
tttttccatttataaatgctctattttttgttgtataaaatacatgcaaaagcttatgtgcatgcttttatcaattcatggatacatccgctgatgagat |
233 |
Q |
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||||||||||||||||| ||||||||||| |||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
6943221 |
tttttccatttataaattctctattttttattgtgtaaaatacatacaaaagcttatgtgcatgtttttatcaattcatggatacatccgctgatgagat |
6943122 |
T |
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| Q |
234 |
aattacttgaaaaatccttctggttacactttaaagaaagccta |
277 |
Q |
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| T |
6943121 |
aattacttgaaaaatccttcaggttacactttaaagaaagccta |
6943078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 137 - 277
Target Start/End: Complemental strand, 6940046 - 6939903
Alignment:
| Q |
137 |
ttccatttataaatgctctattttttgttgtataaaatacatgcaaaa---gcttatgtgcatgcttttatcaattcatggatacatccgctgatgagat |
233 |
Q |
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|||||||| ||||||||||||||||| |||| |||||||||| ||||| || |||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
6940046 |
ttccatttgtaaatgctctattttttcttgtgtaaaatacatacaaaaaaagcatatgtgcatgtctttatcaattcatggatacatccgctgatgagat |
6939947 |
T |
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| Q |
234 |
aattacttgaaaaatccttctggttacactttaaagaaagccta |
277 |
Q |
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| T |
6939946 |
aattacttgaaaaatccttcaggttacacttcaaagaaagccta |
6939903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 22 - 131
Target Start/End: Original strand, 6787484 - 6787594
Alignment:
| Q |
22 |
ggagacttggctaattgctgcacagttttaaaa-attcatatggatctttgtatggttggaacttaatgcattgaatgtatattttgattggactaaatc |
120 |
Q |
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|||||||| |||||| ||||||||||||||||| |||||||||||||||||||||| || |||| |||||||| |||||||||||||||||||||| | | |
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| T |
6787484 |
ggagacttagctaatggctgcacagttttaaaaaattcatatggatctttgtatgggtgaaactcaatgcatttaatgtatattttgattggactatacc |
6787583 |
T |
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| Q |
121 |
tttattatata |
131 |
Q |
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||||||||||| |
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| T |
6787584 |
tttattatata |
6787594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 155 - 253
Target Start/End: Original strand, 6787593 - 6787691
Alignment:
| Q |
155 |
tattttttgttgtataaaatacatgcaaaagcttatgtgcatgcttttatcaattcatggatacatccgctgatgagataattacttgaaaaatccttc |
253 |
Q |
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| T |
6787593 |
tattttttattgtgtaaaatacatgcaaaatcttatggacatgtttttatcaattcatgaatacatccgctgatgagataattacttgaaaaatccttc |
6787691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 6940137 - 6940064
Alignment:
| Q |
19 |
cttggagacttggctaattgctgcacagttttaaaaattcatatggatctttgtatggttggaacttaatgcat |
92 |
Q |
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| T |
6940137 |
cttggagacttagctaattgctgcacagttttaaaaattcatatggatctttgtatggttgaaagttaatgcat |
6940064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 6943308 - 6943234
Alignment:
| Q |
19 |
cttggagacttggctaattgctgcacagtttt-aaaaattcatatggatctttgtatggttggaacttaatgcat |
92 |
Q |
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| T |
6943308 |
cttggagacttagctaattgctgcacagtttttaaaaattgatatggatctttgtatggttgaaacttaatgcat |
6943234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 288 - 366
Target Start/End: Complemental strand, 6939870 - 6939792
Alignment:
| Q |
288 |
tgttgctacgatatgttgtaggtttggatgaagcaataggatactgtgatgcttatggaaagatgccatgtttgcttca |
366 |
Q |
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| T |
6939870 |
tgttgctaccatatattgtaggtttggatgaagcatacggataccgtgatgcttatggaaagatgccatttttgcttca |
6939792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 288 - 366
Target Start/End: Complemental strand, 6943045 - 6942967
Alignment:
| Q |
288 |
tgttgctacgatatgttgtaggtttggatgaagcaataggatactgtgatgcttatggaaagatgccatgtttgcttca |
366 |
Q |
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| T |
6943045 |
tgttgctaccatatattgtagctttggatgaagcatacggatactgtgatgcttatggaaagatgccatttttgcttca |
6942967 |
T |
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