View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11745_low_82 (Length: 373)

Name: NF11745_low_82
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11745_low_82
NF11745_low_82
[»] chr5 (5 HSPs)
chr5 (20-363)||(17387784-17388127)
chr5 (111-323)||(26465723-26465935)
chr5 (132-323)||(9845913-9846104)
chr5 (115-170)||(23958431-23958486)
chr5 (132-182)||(11925620-11925670)
[»] chr8 (6 HSPs)
chr8 (118-354)||(20077580-20077816)
chr8 (94-354)||(44288725-44288985)
chr8 (116-325)||(25574806-25575015)
chr8 (136-257)||(2997639-2997760)
chr8 (132-168)||(12461803-12461839)
chr8 (111-175)||(19800057-19800121)
[»] chr3 (7 HSPs)
chr3 (63-257)||(18433070-18433264)
chr3 (208-353)||(31194154-31194299)
chr3 (208-353)||(52774014-52774159)
chr3 (278-354)||(50059872-50059948)
chr3 (115-182)||(10544360-10544427)
chr3 (111-175)||(12297686-12297750)
chr3 (111-175)||(19585641-19585705)
[»] chr2 (7 HSPs)
chr2 (63-257)||(30154766-30154960)
chr2 (116-324)||(26360449-26360657)
chr2 (116-325)||(18498778-18498987)
chr2 (103-170)||(34978790-34978857)
chr2 (55-172)||(20041696-20041813)
chr2 (118-170)||(13131885-13131937)
chr2 (132-168)||(40091446-40091482)
[»] scaffold0779 (1 HSPs)
scaffold0779 (116-325)||(4901-5110)
[»] chr4 (4 HSPs)
chr4 (118-174)||(19803288-19803344)
chr4 (208-353)||(13988964-13989109)
chr4 (118-174)||(8122123-8122179)
chr4 (118-173)||(14040099-14040154)
[»] scaffold0014 (1 HSPs)
scaffold0014 (208-353)||(94808-94953)
[»] chr1 (5 HSPs)
chr1 (256-323)||(6531821-6531888)
chr1 (130-180)||(9796043-9796093)
chr1 (111-175)||(52778966-52779030)
chr1 (110-173)||(47803917-47803980)
chr1 (132-168)||(8190678-8190714)
[»] chr6 (3 HSPs)
chr6 (208-257)||(26134522-26134571)
chr6 (136-182)||(21752805-21752851)
chr6 (136-182)||(33580683-33580729)
[»] scaffold0329 (1 HSPs)
scaffold0329 (111-175)||(12295-12359)
[»] chr7 (4 HSPs)
chr7 (208-257)||(16257600-16257649)
chr7 (132-173)||(19606707-19606748)
chr7 (132-173)||(37012368-37012409)
chr7 (132-168)||(4245006-4245042)


Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 20 - 363
Target Start/End: Complemental strand, 17388127 - 17387784
Alignment:
Q  20 acttcctacttgcttgctttaaaccatacaagcttttcatcaatttacaaacttgatttggttttgtgcatgtgacaccttctggaattgccatatatac 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17388127 acttcctacttgcttgctttaaaccatacaagcttttcatcaatttacaaacttgatttggttttgtgcatgtgacaccttctggaattgccatatatac 17388028  T
Q  120 atcttcttggagatctccatgtaaaaaggcattgtttacatctaattgatgtaaattccagttatttatggcagctagagctagtagtgttctgacagta 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  17388027 atcttcttggagatctccatgtaaaaaggcattgtttacatctaattgatgtaaattccagttatttatggcagatagagctagtagtgttctgacagta 17387928  T
Q  220 gtaagtttggccactggtgaaaaggtgtcaaagaaatccaaaccctctatttggttgtatccttttgcaactaatttggccttgtacctttcaatggatc 319  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  17387927 gtaagtttggccattggtgaaaaggtgtcaaagaaatccaaaccctctatttggttgtatccttttgcaaccaatctggccttgtacctttcaatggatc 17387828  T
Q  320 catcagacttatgctttattttatatacccatttgttgcctatg 363  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  17387827 catcagacttatgctttattttatatacccatttgttgcctatg 17387784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 323
Target Start/End: Original strand, 26465723 - 26465935
Alignment:
Q  111 catatatacatcttcttggagatctccatgtaaaaaggcattgtttacatctaattgatgtaaattccagttatttatggcagctagagctagtagtgtt 210  Q
    |||||| |||||||||||||| || ||||| ||||| ||||| || ||||| |||||||| |  | ||||||||| ||    |||| |||||  |  |||    
T  26465723 catatacacatcttcttggaggtcaccatgcaaaaatgcattattgacatccaattgatgaatgtgccagttattcatatatgctaaagctataatggtt 26465822  T
Q  211 ctgacagtagtaagtttggccactggtgaaaaggtgtcaaagaaatccaaaccctctatttggttgtatccttttgcaactaatttggccttgtaccttt 310  Q
    |||||||| || ||||| || ||||||||| | || |||||  ||||||||||||| ||||||||||| || |||||||| | | | || ||||| ||||    
T  26465823 ctgacagttgtgagtttagcaactggtgaatatgtatcaaaataatccaaaccctcaatttggttgtaaccctttgcaacaagtcttgctttgtatcttt 26465922  T
Q  311 caatggatccatc 323  Q
    |||| || |||||    
T  26465923 caattgagccatc 26465935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 132 - 323
Target Start/End: Original strand, 9845913 - 9846104
Alignment:
Q  132 atctccatgtaaaaaggcattgtttacatctaattgatgtaaattccagttatttatggcagctagagctagtagtgttctgacagtagtaagtttggcc 231  Q
    ||||||||| | ||||||||| ||||||||||||||||||| || ||| ||||| |||| ||||||||| |  | |  |||||  || || ||||| ||     
T  9845913 atctccatgcagaaaggcattatttacatctaattgatgtagatgccaattattgatggaagctagagccaaaattaatctgattgtggttagtttagct 9846012  T
Q  232 actggtgaaaaggtgtcaaagaaatccaaaccctctatttggttgtatccttttgcaactaatttggccttgtacctttcaatggatccatc 323  Q
    || |||||| |||| |||||  ||||||| || || |||||||| || || |||||||||||| | || ||| | |||||||| ||||||||    
T  9846013 acaggtgaataggtatcaaaataatccaagccttcaatttggttataaccctttgcaactaatctagctttgaatctttcaatagatccatc 9846104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 170
Target Start/End: Complemental strand, 23958486 - 23958431
Alignment:
Q  115 tatacatcttcttggagatctccatgtaaaaaggcattgtttacatctaattgatg 170  Q
    ||||||||||||||||||||||| || ||||||| ||| || ||||||||||||||    
T  23958486 tatacatcttcttggagatctccctgcaaaaaggaattattaacatctaattgatg 23958431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 182
Target Start/End: Complemental strand, 11925670 - 11925620
Alignment:
Q  132 atctccatgtaaaaaggcattgtttacatctaattgatgtaaattccagtt 182  Q
    ||||||||||| || ||||||||||||||| | ||||||||||| ||||||    
T  11925670 atctccatgtagaatggcattgtttacatcaagttgatgtaaataccagtt 11925620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 118 - 354
Target Start/End: Complemental strand, 20077816 - 20077580
Alignment:
Q  118 acatcttcttggagatctccatgtaaaaaggcattgtttacatctaattgatgtaaattccagttatttatggcagctagagctagtagtgttctgacag 217  Q
    |||||||| || | |||| |||| | ||| ||||||||||||||||| |||||||||| |||||  || | || ||| | |||||| || ||||| || |    
T  20077816 acatcttcctgcaaatcttcatgaagaaatgcattgtttacatctaactgatgtaaatgccagtgtttgagggaagcaatagctagaagagttctaactg 20077717  T
Q  218 tagtaagtttggccactggtgaaaaggtgtcaaagaaatccaaaccctctatttggttgtatccttttgcaactaatttggccttgtacctttcaatgga 317  Q
    | || |||||||| || || |||||||||||||| |||||||| ||||| ||||| ||||| |||||||| || | | |||| |||||||||||||| ||    
T  20077716 ttgtgagtttggcaacaggagaaaaggtgtcaaaaaaatccaagccctcaatttgattgtaaccttttgctaccagtctggctttgtacctttcaataga 20077617  T
Q  318 tccatcagacttatgctttattttatatacccatttg 354  Q
     ||||| | |||||| || | | |||| |||||||||    
T  20077616 gccatctgccttatgtttcactctatacacccatttg 20077580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 94 - 354
Target Start/End: Original strand, 44288725 - 44288985
Alignment:
Q  94 acaccttctggaattgccatatatacatcttcttggagatctccatgtaaaaaggcattgtttacatctaattgatgtaaattccagttatttatggcag 193  Q
    |||||||| ||||  | |||||| ||||| |||| |||||| ||||| ||||| ||||| ||||||||||| ||||| |||| ||| | ||| || | ||    
T  44288725 acaccttcaggaacagtcatatagacatcctcttcgagatccccatgcaaaaatgcattatttacatctaactgatgcaaatgccaatgattaattgaag 44288824  T
Q  194 ctagagctagtagtgttctgacagtagtaagtttggccactggtgaaaaggtgtcaaagaaatccaaaccctctatttggttgtatccttttgcaactaa 293  Q
    ||| ||| ||||   |||| |||||||| ||||| ||||  |||||||| ||||||||  |||| || ||||| | ||| ||||| ||||||||||||||    
T  44288825 ctaaagcaagtaccattcttacagtagtgagtttcgccataggtgaaaatgtgtcaaaataatctaagccctcaacttgattgtagccttttgcaactaa 44288924  T
Q  294 tttggccttgtacctttcaatggatccatcagacttatgctttattttatatacccatttg 354  Q
    | |||| ||  | |||||||  || |||||||  || ||||| | ||| ||||||||||||    
T  44288925 tctggctttaaatctttcaactgagccatcagctttgtgcttaactttgtatacccatttg 44288985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 116 - 325
Target Start/End: Original strand, 25574806 - 25575015
Alignment:
Q  116 atacatcttcttggagatctccatgtaaaaaggcattgtttacatctaattgatgtaaattccagttatttatggcagctagagctagtagtgttctgac 215  Q
    ||||||||||||| | ||||||||| | ||| ||||| || ||||| | ||||||||||| ||| ||||  || | ||| | | |||| || ||||| ||    
T  25574806 atacatcttcttgcaaatctccatgaagaaatgcattattcacatcaagttgatgtaaatgccaattatgaatagaagcaacacctagaagagttctaac 25574905  T
Q  216 agtagtaagtttggccactggtgaaaaggtgtcaaagaaatccaaaccctctatttggttgtatccttttgcaactaatttggccttgtacctttcaatg 315  Q
    ||| || || || || || || || || |||| ||||||||||| |||||| || || ||||| ||||| ||||||| | |||||||||||||||||||     
T  25574906 agttgtgagcttagcaacaggagagaaagtgttaaagaaatccagaccctcaatctgattgtaccctttagcaactagtctggccttgtacctttcaata 25575005  T
Q  316 gatccatcag 325  Q
    || |||||||    
T  25575006 gagccatcag 25575015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 136 - 257
Target Start/End: Complemental strand, 2997760 - 2997639
Alignment:
Q  136 ccatgtaaaaaggcattgtttacatctaattgatgtaaattccagttatttatggcagctagagctagtagtgttctgacagtagtaagtttggccactg 235  Q
    ||||||| ||| |||||||||||||| || |||||||||| |||||| ||||| | |||||  || ||||   |||| || || ||||| ||||| ||||    
T  2997760 ccatgtagaaaagcattgtttacatccaactgatgtaaatgccagttttttattgaagctatggcaagtaaaattcttactgtggtaagcttggctactg 2997661  T
Q  236 gtgaaaaggtgtcaaagaaatc 257  Q
    ||||||| || ||||| |||||    
T  2997660 gtgaaaaagtatcaaaaaaatc 2997639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 168
Target Start/End: Complemental strand, 12461839 - 12461803
Alignment:
Q  132 atctccatgtaaaaaggcattgtttacatctaattga 168  Q
    ||||||||||||||||||||| |||||||| ||||||    
T  12461839 atctccatgtaaaaaggcattttttacatcaaattga 12461803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 175
Target Start/End: Original strand, 19800057 - 19800121
Alignment:
Q  111 catatatacatcttcttggagatctccatgtaaaaaggcattgtttacatctaattgatgtaaat 175  Q
    |||||||||||| | ||  |||||||||||  |||| |||||||||||||| || ||||||||||    
T  19800057 catatatacatcctattaaagatctccatgcgaaaatgcattgtttacatccaactgatgtaaat 19800121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 63 - 257
Target Start/End: Original strand, 18433070 - 18433264
Alignment:
Q  63 tttacaaacttgatttggttttgtgcatgtgacaccttctggaattgccatatatacatcttcttggagatctccatgtaaaaaggcattgtttacatct 162  Q
    ||||||||||||||| ||||| || ||||  |||||||||||||| | ||| || || |||||||| |  |||||||| ||||| ||||| |||||||||    
T  18433070 tttacaaacttgattaggtttggtacatgaaacaccttctggaatagtcatgtaaacttcttcttgtaattctccatgcaaaaacgcattatttacatct 18433169  T
Q  163 aattgatgtaaattccagttatttatggcagctagagctagtagtgttctgacagtagtaagtttggccactggtgaaaaggtgtcaaagaaatc 257  Q
    ||||||||||||| |||   ||  || | ||| ||||| |||| |||||| || ||||| ||||| || || ||||||||||| ||||| |||||    
T  18433170 aattgatgtaaatgccaagaatgaattgaagcaagagcaagtaatgttctaactgtagtgagttttgcaacaggtgaaaaggtatcaaaaaaatc 18433264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 353
Target Start/End: Original strand, 31194154 - 31194299
Alignment:
Q  208 gttctgacagtagtaagtttggccactggtgaaaaggtgtcaaagaaatccaaaccctctatttggttgtatccttttgcaactaatttggccttgtacc 307  Q
    |||||||||||||||| |||||| ||||||||||| |||||||| ||||| | ||| || | ||| || || ||||| || || | | ||||||||||||    
T  31194154 gttctgacagtagtaattttggctactggtgaaaaagtgtcaaaaaaatcaataccttcaacttgattataacctttagccaccagtctggccttgtacc 31194253  T
Q  308 tttcaatggatccatcagacttatgctttattttatatacccattt 353  Q
    | || |||   ||||| | |||||| || |||||||| ||||||||    
T  31194254 tctctatgctcccatctgccttatgtttgattttatacacccattt 31194299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 353
Target Start/End: Complemental strand, 52774159 - 52774014
Alignment:
Q  208 gttctgacagtagtaagtttggccactggtgaaaaggtgtcaaagaaatccaaaccctctatttggttgtatccttttgcaactaatttggccttgtacc 307  Q
    |||||||||||||||| |||||| ||||||||||| |||||||| ||||| | ||| || | ||| || || ||||| || || | | ||||||||||||    
T  52774159 gttctgacagtagtaattttggctactggtgaaaaagtgtcaaaaaaatcaataccttcaacttgattataacctttagccaccagtctggccttgtacc 52774060  T
Q  308 tttcaatggatccatcagacttatgctttattttatatacccattt 353  Q
    | || |||   ||||| | |||||| || |||||||| ||||||||    
T  52774059 tctctatgctcccatctgccttatgtttgattttatacacccattt 52774014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 354
Target Start/End: Complemental strand, 50059948 - 50059872
Alignment:
Q  278 atccttttgcaactaatttggccttgtacctttcaatggatccatcagacttatgctttattttatatacccatttg 354  Q
    ||||||| ||||| ||| | ||||||||||||||||| |||||||||| ||| |  ||||| || ||||||||||||    
T  50059948 atcctttggcaaccaatcttgccttgtacctttcaatagatccatcagccttgtattttatattgtatacccatttg 50059872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 115 - 182
Target Start/End: Complemental strand, 10544427 - 10544360
Alignment:
Q  115 tatacatcttcttggagatctccatgtaaaaaggcattgtttacatctaattgatgtaaattccagtt 182  Q
    ||||||| |||||| | ||||||||| |  || |||||||||||||||||||||| ||||| ||||||    
T  10544427 tatacattttcttgcaaatctccatgaaggaaagcattgtttacatctaattgatataaatgccagtt 10544360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 175
Target Start/End: Complemental strand, 12297750 - 12297686
Alignment:
Q  111 catatatacatcttcttggagatctccatgtaaaaaggcattgtttacatctaattgatgtaaat 175  Q
    |||||| ||||||||||| | ||||||||| | ||| |||||| ||||||| | |||||||||||    
T  12297750 catataaacatcttcttgtaaatctccatgaagaaaagcattgcttacatcaagttgatgtaaat 12297686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 175
Target Start/End: Original strand, 19585641 - 19585705
Alignment:
Q  111 catatatacatcttcttggagatctccatgtaaaaaggcattgtttacatctaattgatgtaaat 175  Q
    |||||| ||||||||||| | ||||||||| |  || |||||||||||||| | |||||||||||    
T  19585641 catataaacatcttcttgtaaatctccatgaaggaaagcattgtttacatcaagttgatgtaaat 19585705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 63 - 257
Target Start/End: Complemental strand, 30154960 - 30154766
Alignment:
Q  63 tttacaaacttgatttggttttgtgcatgtgacaccttctggaattgccatatatacatcttcttggagatctccatgtaaaaaggcattgtttacatct 162  Q
    ||||||||||||||| ||||| || |||   |||||||||||||| | |||||| || |||||||| |  |||||||| ||||| ||||| |||||||||    
T  30154960 tttacaaacttgattaggtttggtacataaaacaccttctggaatagtcatataaacttcttcttgtaattctccatgcaaaaacgcattatttacatct 30154861  T
Q  163 aattgatgtaaattccagttatttatggcagctagagctagtagtgttctgacagtagtaagtttggccactggtgaaaaggtgtcaaagaaatc 257  Q
    ||||||||||||| |||   ||  || | ||| ||||| |||| |||||| || ||||| ||||| || || ||||||||||| ||||| |||||    
T  30154860 aattgatgtaaatgccaagaatgaattgaagcaagagcaagtaatgttctaactgtagtgagttttgcaacaggtgaaaaggtatcaaaaaaatc 30154766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 116 - 324
Target Start/End: Original strand, 26360449 - 26360657
Alignment:
Q  116 atacatcttcttggagatctccatgtaaaaaggcattgtttacatctaattgatgtaaattccagttatttatggcagctagagctagtagtgttctgac 215  Q
    ||||||||||||| | ||||||||| | ||| ||||| || ||||| | ||||||||||| ||| ||||  || | ||| | |||||| || ||||| ||    
T  26360449 atacatcttcttgcaaatctccatgaagaaatgcattattcacatcaagttgatgtaaatgccaattatgaatagaagcaacagctagaagagttctaac 26360548  T
Q  216 agtagtaagtttggccactggtgaaaaggtgtcaaagaaatccaaaccctctatttggttgtatccttttgcaactaatttggccttgtacctttcaatg 315  Q
    ||| || || || || || || || || |||||||||||||||| |||||| || || ||||| ||||| ||||||| | |||| ||||||||||||||     
T  26360549 agttgtgagcttagcaacaggagagaaagtgtcaaagaaatccagaccctcaatctgattgtaccctttagcaactagtctggctttgtacctttcaata 26360648  T
Q  316 gatccatca 324  Q
    || ||||||    
T  26360649 gagccatca 26360657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 116 - 325
Target Start/End: Original strand, 18498778 - 18498987
Alignment:
Q  116 atacatcttcttggagatctccatgtaaaaaggcattgtttacatctaattgatgtaaattccagttatttatggcagctagagctagtagtgttctgac 215  Q
    ||||||||||||| | ||||||||| | ||| ||||| || ||||| | ||||||||||| ||| ||||  || | ||| | |||||| || ||||| |     
T  18498778 atacatcttcttgcaaatctccatgaagaaatgcattattcacatcaagttgatgtaaatgccaattatgaatagaagcaacagctagaagagttctaat 18498877  T
Q  216 agtagtaagtttggccactggtgaaaaggtgtcaaagaaatccaaaccctctatttggttgtatccttttgcaactaatttggccttgtacctttcaatg 315  Q
    ||| || || || || || || || || |||||||||||||||| |||||| || || ||||| ||||| ||||||| | |||| ||||||||||||||     
T  18498878 agttgtgagcttagcaacaggagagaaagtgtcaaagaaatccagaccctcaatctgattgtaccctttagcaactagtctggctttgtacctttcaata 18498977  T
Q  316 gatccatcag 325  Q
    || |||||||    
T  18498978 gagccatcag 18498987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 170
Target Start/End: Original strand, 34978790 - 34978857
Alignment:
Q  103 ggaattgccatatatacatcttcttggagatctccatgtaaaaaggcattgtttacatctaattgatg 170  Q
    ||||| ||||| || |||||||| || ||||||||||| | |||||||||||||||||| ||||||||    
T  34978790 ggaatggccatgtaaacatcttcatgaagatctccatgaagaaaggcattgtttacatccaattgatg 34978857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 55 - 172
Target Start/End: Original strand, 20041696 - 20041813
Alignment:
Q  55 ttcatcaatttacaaacttgatttggttttgtgcatgtgacaccttctggaattgccatatatacatcttcttggagatctccatgtaaaaaggcattgt 154  Q
    |||| ||||||||||||||| ||||||||||  |||   || ||||  || | || ||| ||||| |||||||| || || |||||||||||||| ||||    
T  20041696 ttcaacaatttacaaacttggtttggttttgaacattgaactccttgaggcactgacatgtatacttcttcttgtaggtcaccatgtaaaaaggcgttgt 20041795  T
Q  155 ttacatctaattgatgta 172  Q
    ||||||| || |||||||    
T  20041796 ttacatccaactgatgta 20041813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 13131937 - 13131885
Alignment:
Q  118 acatcttcttggagatctccatgtaaaaaggcattgtttacatctaattgatg 170  Q
    |||| |||||| ||||| ||||| ||||| ||||| |||||||||||||||||    
T  13131937 acattttcttgaagatcaccatgcaaaaatgcattatttacatctaattgatg 13131885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 168
Target Start/End: Complemental strand, 40091482 - 40091446
Alignment:
Q  132 atctccatgtaaaaaggcattgtttacatctaattga 168  Q
    ||||||||||||||||||||| |||||||| ||||||    
T  40091482 atctccatgtaaaaaggcattttttacatcaaattga 40091446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0779 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0779
Description:

Target: scaffold0779; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 116 - 325
Target Start/End: Complemental strand, 5110 - 4901
Alignment:
Q  116 atacatcttcttggagatctccatgtaaaaaggcattgtttacatctaattgatgtaaattccagttatttatggcagctagagctagtagtgttctgac 215  Q
    ||||||||||||| | ||||||||| | |||  |||| || ||||| | ||||||||||||||| ||||  || | ||| | | |||| || ||||| |     
T  5110 atacatcttcttgcaaatctccatgaagaaattcattattcacatcaagttgatgtaaattccaattatgaatagaagcaacaactagaagagttctaat 5011  T
Q  216 agtagtaagtttggccactggtgaaaaggtgtcaaagaaatccaaaccctctatttggttgtatccttttgcaactaatttggccttgtacctttcaatg 315  Q
    ||| || ||||| || || || || || |||||||| |||| || |||||| || || ||||| ||||| ||||||||| |||| ||||||||||||||     
T  5010 agttgtgagtttagcaacaggagagaaagtgtcaaaaaaattcagaccctcaatctgattgtaccctttagcaactaatctggctttgtacctttcaata 4911  T
Q  316 gatccatcag 325  Q
    || |||||||    
T  4910 gagccatcag 4901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 19803288 - 19803344
Alignment:
Q  118 acatcttcttggagatctccatgtaaaaaggcattgtttacatctaattgatgtaaa 174  Q
    |||||||| |||||||| ||||| | |||||||||||||||||||||||||||||||    
T  19803288 acatcttcatggagatcaccatgaagaaaggcattgtttacatctaattgatgtaaa 19803344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 353
Target Start/End: Complemental strand, 13989109 - 13988964
Alignment:
Q  208 gttctgacagtagtaagtttggccactggtgaaaaggtgtcaaagaaatccaaaccctctatttggttgtatccttttgcaactaatttggccttgtacc 307  Q
    |||||||||||||||| |||||| ||||||||||| |||||||| ||||| | ||| || | ||| || || ||||| || || | | ||||||||||||    
T  13989109 gttctgacagtagtaattttggctactggtgaaaaagtgtcaaaaaaatcaataccttcaacttgattatagcctttagccaccagtctggccttgtacc 13989010  T
Q  308 tttcaatggatccatcagacttatgctttattttatatacccattt 353  Q
    | || |||   ||||| | |||||| || |||||||| ||||||||    
T  13989009 tctctatgctcccatctgccttatgtttgattttatacacccattt 13988964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 8122123 - 8122179
Alignment:
Q  118 acatcttcttggagatctccatgtaaaaaggcattgtttacatctaattgatgtaaa 174  Q
    |||||||| || ||||||||||| | |||||||||||||||||| ||||||||||||    
T  8122123 acatcttcatgaagatctccatgaagaaaggcattgtttacatccaattgatgtaaa 8122179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 118 - 173
Target Start/End: Complemental strand, 14040154 - 14040099
Alignment:
Q  118 acatcttcttggagatctccatgtaaaaaggcattgtttacatctaattgatgtaa 173  Q
    ||||| || |||||||||||||| | ||| ||||||||||||||||||||||||||    
T  14040154 acatcctcatggagatctccatgaagaaatgcattgtttacatctaattgatgtaa 14040099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 353
Target Start/End: Original strand, 94808 - 94953
Alignment:
Q  208 gttctgacagtagtaagtttggccactggtgaaaaggtgtcaaagaaatccaaaccctctatttggttgtatccttttgcaactaatttggccttgtacc 307  Q
    |||||||||||||||| |||||| ||||||||||| |||||||| ||||| | ||| || | ||| || || ||||| || || | | ||||||||||||    
T  94808 gttctgacagtagtaattttggctactggtgaaaaagtgtcaaaaaaatcaataccttcaacttgattatagcctttagccaccagtctggccttgtacc 94907  T
Q  308 tttcaatggatccatcagacttatgctttattttatatacccattt 353  Q
    | || |||   ||||| | |||||| || |||||||| ||||||||    
T  94908 tctctatgctcccatctgccttatgtttgattttatacacccattt 94953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 256 - 323
Target Start/End: Complemental strand, 6531888 - 6531821
Alignment:
Q  256 tccaaaccctctatttggttgtatccttttgcaactaatttggccttgtacctttcaatggatccatc 323  Q
    ||||||||||||||||||||||| ||||||||||||||    || ||| ||||||| |||||||||||    
T  6531888 tccaaaccctctatttggttgtaaccttttgcaactaaacgtgctttgaacctttctatggatccatc 6531821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 180
Target Start/End: Original strand, 9796043 - 9796093
Alignment:
Q  130 agatctccatgtaaaaaggcattgtttacatctaattgatgtaaattccag 180  Q
    |||||||||||||| || ||| | |||||||||||||||||||||||||||    
T  9796043 agatctccatgtaagaaagcaatatttacatctaattgatgtaaattccag 9796093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 175
Target Start/End: Complemental strand, 52779030 - 52778966
Alignment:
Q  111 catatatacatcttcttggagatctccatgtaaaaaggcattgtttacatctaattgatgtaaat 175  Q
    |||||| ||||||||||| | ||||||||| | ||| |||||||||||||| | |||||||||||    
T  52779030 catataaacatcttcttgtaaatctccatgaagaaaagcattgtttacatcaagttgatgtaaat 52778966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 110 - 173
Target Start/End: Complemental strand, 47803980 - 47803917
Alignment:
Q  110 ccatatatacatcttcttggagatctccatgtaaaaaggcattgtttacatctaattgatgtaa 173  Q
    |||||||||  ||||| | ||||| |||||||| ||| ||||| ||||||||||||||||||||    
T  47803980 ccatatatatttcttcatcgagatatccatgtagaaaagcattttttacatctaattgatgtaa 47803917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 168
Target Start/End: Original strand, 8190678 - 8190714
Alignment:
Q  132 atctccatgtaaaaaggcattgtttacatctaattga 168  Q
    ||||||||||||||||||||| |||||||| ||||||    
T  8190678 atctccatgtaaaaaggcattttttacatcaaattga 8190714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 208 - 257
Target Start/End: Complemental strand, 26134571 - 26134522
Alignment:
Q  208 gttctgacagtagtaagtttggccactggtgaaaaggtgtcaaagaaatc 257  Q
    |||||||||||||||| |||||| ||||||||||| |||||||| |||||    
T  26134571 gttctgacagtagtaattttggctactggtgaaaaagtgtcaaaaaaatc 26134522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 182
Target Start/End: Original strand, 21752805 - 21752851
Alignment:
Q  136 ccatgtaaaaaggcattgtttacatctaattgatgtaaattccagtt 182  Q
    ||||| ||||| ||||||| |||||||||||||||||||| ||||||    
T  21752805 ccatgcaaaaatgcattgtgtacatctaattgatgtaaatgccagtt 21752851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 182
Target Start/End: Complemental strand, 33580729 - 33580683
Alignment:
Q  136 ccatgtaaaaaggcattgtttacatctaattgatgtaaattccagtt 182  Q
    ||||| ||||| ||||||| |||||||||||||||||||| ||||||    
T  33580729 ccatgcaaaaatgcattgtgtacatctaattgatgtaaatgccagtt 33580683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 175
Target Start/End: Complemental strand, 12359 - 12295
Alignment:
Q  111 catatatacatcttcttggagatctccatgtaaaaaggcattgtttacatctaattgatgtaaat 175  Q
    |||||| ||||||||||| | ||||||||| | ||| |||||||||||||| | |||||||||||    
T  12359 catataaacatcttcttgtaaatctccatgaagaaaagcattgtttacatcaagttgatgtaaat 12295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 257
Target Start/End: Complemental strand, 16257649 - 16257600
Alignment:
Q  208 gttctgacagtagtaagtttggccactggtgaaaaggtgtcaaagaaatc 257  Q
    ||||||| |||||||| |||||| ||||||||||| |||||||| |||||    
T  16257649 gttctgatagtagtaattttggctactggtgaaaaagtgtcaaaaaaatc 16257600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 173
Target Start/End: Original strand, 19606707 - 19606748
Alignment:
Q  132 atctccatgtaaaaaggcattgtttacatctaattgatgtaa 173  Q
    |||||||||||||||||||||||  ||||||||||| |||||    
T  19606707 atctccatgtaaaaaggcattgtgaacatctaattggtgtaa 19606748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 173
Target Start/End: Complemental strand, 37012409 - 37012368
Alignment:
Q  132 atctccatgtaaaaaggcattgtttacatctaattgatgtaa 173  Q
    |||||||||||||||||||||||  ||||||||||| |||||    
T  37012409 atctccatgtaaaaaggcattgtgaacatctaattggtgtaa 37012368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 168
Target Start/End: Complemental strand, 4245042 - 4245006
Alignment:
Q  132 atctccatgtaaaaaggcattgtttacatctaattga 168  Q
    ||||||||||||||||||||| |||||||| ||||||    
T  4245042 atctccatgtaaaaaggcattttttacatcaaattga 4245006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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