View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_low_84 (Length: 367)
Name: NF11745_low_84
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_low_84 |
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| [»] scaffold0227 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 15 - 356
Target Start/End: Complemental strand, 10863375 - 10863034
Alignment:
| Q |
15 |
gaaagaataaggtatttaatgtcaccagtatattaacttccaccaagttagaagcacttttaagtacactaacaatatacaaaacttctcctctgtcatc |
114 |
Q |
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| T |
10863375 |
gaaagaataaggtatttatggtcacctgtatagtaagttccaccaggttagaagcacttttgagtacactaacaatatacaaaacttctcctctgtcatt |
10863276 |
T |
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| Q |
115 |
catattcacgaacattaaacttagatactttaagcttatcaactgtgatggatgaatgatatctgcaaagagctatgaggcatatttgtacaacacttat |
214 |
Q |
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| T |
10863275 |
catattcaaggtaaataattccagatactttaagcttatcaactgtgatggatgaatgatatctgcatagagctatgaggtatatttgtacaacacttat |
10863176 |
T |
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| Q |
215 |
aagtacagctttcaatgtaaataccggaaacattggattgaaccatnnnnnnnnngatacaacattgcttctctttcaaacatacaataaaagataagtt |
314 |
Q |
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| T |
10863175 |
aagtacaactttcaatgtaaatactggaaacattggattgaaccgtaaaaaaaaataaacaacgttgcttctctttcaaacatacaataaaagataagtt |
10863076 |
T |
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| Q |
315 |
taaaagatcaaactgcaaggtcatactagatagaagtgatgt |
356 |
Q |
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| T |
10863075 |
taaaagatcaaactgcgagggcatactagatagaagtgatgt |
10863034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 14 - 329
Target Start/End: Complemental strand, 10902659 - 10902338
Alignment:
| Q |
14 |
agaaagaataaggtatttaatgtcaccagtatattaacttccaccaagttagaagcacttttaagtacactaacaatatacaaaacttctcctctgtcat |
113 |
Q |
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| T |
10902659 |
agaaagaataaggtatttattgtcacctgtatatcaagttccaccaggttagaagcacttttgagtacactaacaatatccaaaacttctcctctgtcat |
10902560 |
T |
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| Q |
114 |
ccatattcacgaacattaaacttagatactttaagcttatcaactgtgatggatgaatgatatctgcaaagagctatgaggcatatttgtacaacactta |
213 |
Q |
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| T |
10902559 |
ccatattcaaggcttttaatttcagatactttacgcttatcaactatgatggatgaatgatatctgcatagacctatgaggcatatttgtacagcactta |
10902460 |
T |
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| Q |
214 |
taagtacagct---------ttcaatgtaaataccggaaacattggattgaaccatnnnnnnnnngatacaacattgcttctctttcaaacatacaataa |
304 |
Q |
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| T |
10902459 |
taagtacaactaacacaacattcaatgtaaatactggaaa-attggattgaaccataaaaaaaag--tacaacattgcttcttcttcaaatatacagtaa |
10902363 |
T |
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| Q |
305 |
aagataagtttaaaagatcaaactg |
329 |
Q |
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| T |
10902362 |
aagataaatttaagagataaaactg |
10902338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 56 - 181
Target Start/End: Original strand, 40010264 - 40010389
Alignment:
| Q |
56 |
accaagttagaagcacttttaagtacactaacaatatacaaaacttctcctctgtcatccatattcacgaacattaaacttagatactttaagcttatca |
155 |
Q |
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|||| ||||||||||||||| |||||||||||||||| ||||| |||| |||| ||||| |||||||| |||| | ||||||||||||||||||| |
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| T |
40010264 |
accaggttagaagcacttttgagtacactaacaatatgcaaaagttcttctcttcgatccaaattcacgatatttaatttcagatactttaagcttatca |
40010363 |
T |
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| Q |
156 |
actgtgatggatgaatgatatctgca |
181 |
Q |
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| T |
40010364 |
gctgtgatggatgaatgatatctgca |
40010389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 52 - 181
Target Start/End: Complemental strand, 16866373 - 16866244
Alignment:
| Q |
52 |
ttccaccaagttagaagcacttttaagtacactaacaatatacaaaacttctcctctgtcatccatattcacgaacattaaacttagatactttaagctt |
151 |
Q |
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| T |
16866373 |
ttccaccaggttagaagcacttttgagtacactaacaatatacaaaagttcttctctttcatccaaattcacgcgatctaatttcagatacttcaagcct |
16866274 |
T |
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| Q |
152 |
atcaactgtgatggatgaatgatatctgca |
181 |
Q |
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|||| ||||||||||||||||||||||||| |
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| T |
16866273 |
atcagctgtgatggatgaatgatatctgca |
16866244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0227 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0227
Description:
Target: scaffold0227; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 61 - 181
Target Start/End: Original strand, 2435 - 2555
Alignment:
| Q |
61 |
gttagaagcacttttaagtacactaacaatatacaaaacttctcctctgtcatccatattcacgaacattaaactt-agatactttaagcttatcaactg |
159 |
Q |
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| T |
2435 |
gttagaagcacttttgagtacactaacaatataatatagttctcctctttcatccaaattcaccga-attcaatttcagatactttaagctaatcaactg |
2533 |
T |
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| Q |
160 |
tgatggatgaatgatatctgca |
181 |
Q |
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| T |
2534 |
tgacggaggaatgatatctgca |
2555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0227; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 274 - 333
Target Start/End: Original strand, 2673 - 2732
Alignment:
| Q |
274 |
caacattgcttctctttcaaacatacaataaaagataagtttaaaagatcaaactgcaag |
333 |
Q |
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| T |
2673 |
caacattgcttctctttcaaatacacaataaaagataactttaaaagatcaaactgcaag |
2732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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