View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11745_low_85 (Length: 365)

Name: NF11745_low_85
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11745_low_85
NF11745_low_85
[»] chr4 (8 HSPs)
chr4 (1-291)||(54230196-54230503)
chr4 (1-130)||(6409488-6409617)
chr4 (1-110)||(24958119-24958227)
chr4 (61-134)||(19657879-19657952)
chr4 (85-134)||(26677293-26677342)
chr4 (67-132)||(13980597-13980662)
chr4 (143-175)||(39449473-39449505)
chr4 (316-344)||(54230522-54230550)
[»] chr7 (3 HSPs)
chr7 (7-134)||(3958877-3959004)
chr7 (56-131)||(19289897-19289972)
chr7 (143-175)||(41000834-41000866)
[»] chr3 (3 HSPs)
chr3 (56-132)||(14993500-14993576)
chr3 (61-131)||(27741661-27741731)
chr3 (85-134)||(51266966-51267015)
[»] scaffold0341 (1 HSPs)
scaffold0341 (1-99)||(5966-6064)
[»] chr1 (4 HSPs)
chr1 (1-99)||(6504283-6504381)
chr1 (1-80)||(11408342-11408421)
chr1 (83-130)||(26237087-26237134)
chr1 (61-99)||(49098282-49098320)
[»] chr5 (1 HSPs)
chr5 (61-134)||(25444561-25444634)
[»] chr8 (2 HSPs)
chr8 (5-130)||(6443498-6443619)
chr8 (81-134)||(13995282-13995335)
[»] chr6 (4 HSPs)
chr6 (61-132)||(22577371-22577442)
chr6 (1-51)||(11139604-11139654)
chr6 (84-130)||(3524075-3524121)
chr6 (56-120)||(11139553-11139617)
[»] scaffold0009 (1 HSPs)
scaffold0009 (1-70)||(53949-54018)
[»] chr2 (1 HSPs)
chr2 (143-176)||(17896892-17896925)


Alignment Details
Target: chr4 (Bit Score: 148; Significance: 5e-78; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 54230196 - 54230503
Alignment:
Q  1 ctaacaaagggctatattctaaatcaataaaaggaaacacaaaaaacaaagctagcaccgaaatcaaagataaccctcctcacaacaacataaacaaaag 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||    
T  54230196 ctaacaaagggctatattctaaatcaataaaaggaaacaccaaaaacaaagctaacaccaaaatcaaagataaccctccacacaacaacataaacaaaag 54230295  T
Q  101 ttgtatcaaatccttcaaacatcatcacaag------------ctgaatctaaattattcaccttaaaaaatgggaattctaaccacttgattatctgaa 188  Q
    |||||| ||||||||||||||||||||||||            ||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||    
T  54230296 ttgtattaaatccttcaaacatcatcacaagctgccataaaatctgaatctaaattattcaccttaaaaaatggaaattctaaccacttgactatccgaa 54230395  T
Q  189 agnnnnnnnnnca-----agtgagaattaatttgaactaacagctacaaacacgtgatcannnnnnnnnnnnaccaaaccagcatgtcatattggtgagt 283  Q
    ||          |     ||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||    
T  54230396 agaaagaaagaaaaaattagtgagaattaatttgaactaacagctacaaacacgtgatcatttttattttttaccaaaccagcatgtcatattggtgagt 54230495  T
Q  284 gataaaca 291  Q
    ||||||||    
T  54230496 gataaaca 54230503  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 6409488 - 6409617
Alignment:
Q  1 ctaacaaagggctatattctaaatcaataaaaggaaacacaaaaaacaaagctagcaccgaaatcaaagataaccctcctcacaacaacataaacaaaag 100  Q
    ||||||||||||||| ||| |||| |||||||| |||||| ||||||||||||| ||||  ||||||| | || ||||  ||||| ||||||||||||||    
T  6409488 ctaacaaagggctatcttcgaaataaataaaagaaaacaccaaaaacaaagctaacaccacaatcaaaaacaaacctctgcacaataacataaacaaaag 6409587  T
Q  101 ttgtatcaaatccttcaaacatcatcacaa 130  Q
    ||| | ||||  | ||||||||||||||||    
T  6409588 ttgcaccaaaatcctcaaacatcatcacaa 6409617  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 24958227 - 24958119
Alignment:
Q  1 ctaacaaagggctatattctaaatcaataaaaggaaacacaaaaaacaaagctagcaccgaaatcaaagataaccctcctcacaacaacataaacaaaag 100  Q
    ||||||||| ||||| | | ||||||||||| |||||||| ||||||||||||| ||||  ||||||| | || ||||| ||||| ||||||||||||||    
T  24958227 ctaacaaagagctatctccaaaatcaataaa-ggaaacaccaaaaacaaagctaacaccacaatcaaatacaaacctccgcacaataacataaacaaaag 24958129  T
Q  101 ttgtatcaaa 110  Q
    ||||| ||||    
T  24958128 ttgtaccaaa 24958119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 61 - 134
Target Start/End: Original strand, 19657879 - 19657952
Alignment:
Q  61 aaatcaaagataaccctcctcacaacaacataaacaaaagttgtatcaaatccttcaaacatcatcacaagctg 134  Q
    |||||||||| || ||||| ||||| |||||||| |||||||||| ||||| | ||||||||||||||||||||    
T  19657879 aaatcaaagacaaacctccacacaataacataaagaaaagttgtaccaaattcctcaaacatcatcacaagctg 19657952  T

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Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 85 - 134
Target Start/End: Original strand, 26677293 - 26677342
Alignment:
Q  85 acaacataaacaaaagttgtatcaaatccttcaaacatcatcacaagctg 134  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  26677293 acaacataaacaaaagttgtaccaaatccctcaaacatcatcacaagctg 26677342  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 67 - 132
Target Start/End: Original strand, 13980597 - 13980662
Alignment:
Q  67 aagataaccctcctcacaacaacataaacaaaagttgtatcaaatccttcaaacatcatcacaagc 132  Q
    |||| |||||||  |||||||||||||||||||||||| |||||||  |||||| || ||||||||    
T  13980597 aagacaaccctctgcacaacaacataaacaaaagttgtgtcaaatcactcaaacgtcctcacaagc 13980662  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 175
Target Start/End: Original strand, 39449473 - 39449505
Alignment:
Q  143 ttattcaccttaaaaaatgggaattctaaccac 175  Q
    ||||||||||||||||||| |||||||||||||    
T  39449473 ttattcaccttaaaaaatgtgaattctaaccac 39449505  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 344
Target Start/End: Original strand, 54230522 - 54230550
Alignment:
Q  316 tataactttctttcaattgaggtaatcca 344  Q
    |||||||||||||||||||||||||||||    
T  54230522 tataactttctttcaattgaggtaatcca 54230550  T

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Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 7 - 134
Target Start/End: Complemental strand, 3959004 - 3958877
Alignment:
Q  7 aagggctatattctaaatcaataaaaggaaacacaaaaaacaaagctagcaccgaaatcaaagataaccctcctcacaacaacataaacaaaagttgtat 106  Q
    |||| |||| ||| |||||||||||||||||||||||||| ||||||| |||| ||||| |||| |||||||| ||||||||||||||||||||||| |     
T  3959004 aaggactatcttcgaaatcaataaaaggaaacacaaaaaataaagctaacaccaaaatccaagacaaccctccgcacaacaacataaacaaaagttgcac 3958905  T
Q  107 caaatccttcaaacatcatcacaagctg 134  Q
    ||||||| ||||| ||| ||||||||||    
T  3958904 caaatccctcaaatatcgtcacaagctg 3958877  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 56 - 131
Target Start/End: Original strand, 19289897 - 19289972
Alignment:
Q  56 caccgaaatcaaagataaccctcctcacaacaacataaacaaaagttgtatcaaatccttcaaacatcatcacaag 131  Q
    |||| ||||| |||| | |||||| ||||||||||||||||||||||||| || |||| |||||||||||||||||    
T  19289897 caccaaaatcgaagacacccctccgcacaacaacataaacaaaagttgtaccagatccctcaaacatcatcacaag 19289972  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 175
Target Start/End: Original strand, 41000834 - 41000866
Alignment:
Q  143 ttattcaccttaaaaaatgggaattctaaccac 175  Q
    ||||||||||||||||||| |||||||||||||    
T  41000834 ttattcaccttaaaaaatgtgaattctaaccac 41000866  T

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Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 56 - 132
Target Start/End: Original strand, 14993500 - 14993576
Alignment:
Q  56 caccgaaatcaaagataaccctcctcacaacaacataaacaaaagttgtatcaaatccttcaaacatcatcacaagc 132  Q
    |||| |||||||||| || ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  14993500 caccaaaatcaaagacaaacctcctcacaacaacataaacaaaagttgtaccaaatccctcaaacatcatcacaagc 14993576  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 61 - 131
Target Start/End: Complemental strand, 27741731 - 27741661
Alignment:
Q  61 aaatcaaagataaccctcctcacaacaacataaacaaaagttgtatcaaatccttcaaacatcatcacaag 131  Q
    |||||||||| || ||||| |||||||||||||||||||||||||  |||||| |||||||||||||||||    
T  27741731 aaatcaaagacaaacctccgcacaacaacataaacaaaagttgtactaaatccctcaaacatcatcacaag 27741661  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 134
Target Start/End: Original strand, 51266966 - 51267015
Alignment:
Q  85 acaacataaacaaaagttgtatcaaatccttcaaacatcatcacaagctg 134  Q
    |||||||||| |||||||||| ||||| | ||||| ||||||||||||||    
T  51266966 acaacataaataaaagttgtaccaaattcctcaaatatcatcacaagctg 51267015  T

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Target: scaffold0341 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 6064 - 5966
Alignment:
Q  1 ctaacaaagggctatattctaaatcaataaaaggaaacacaaaaaacaaagctagcaccgaaatcaaagataaccctcctcacaacaacataaacaaaa 99  Q
    ||||||||||| ||| ||| ||||||||||||| |||||| ||||||||||||| |||   ||| ||||| || ||||| |||||||||||||||||||    
T  6064 ctaacaaagggttatcttcgaaatcaataaaagaaaacaccaaaaacaaagctaacacaacaattaaagacaaacctccgcacaacaacataaacaaaa 5966  T

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Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 6504381 - 6504283
Alignment:
Q  1 ctaacaaagggctatattctaaatcaataaaaggaaacacaaaaaacaaagctagcaccgaaatcaaagataaccctcctcacaacaacataaacaaaa 99  Q
    ||||||||||| ||| ||| ||||||||||||| |||||| ||||||||||||| |||   ||| ||||| || ||||| |||||||||||||||||||    
T  6504381 ctaacaaagggttatcttcgaaatcaataaaagaaaacaccaaaaacaaagctaacacaacaattaaagacaaacctccgcacaacaacataaacaaaa 6504283  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 11408421 - 11408342
Alignment:
Q  1 ctaacaaagggctatattctaaatcaataaaaggaaacacaaaaaacaaagctagcaccgaaatcaaagataaccctcct 80  Q
    ||||||||| ||||| | | |||||||||||||||||||| ||||||||||||| ||||  ||||||||| || ||||||    
T  11408421 ctaacaaagagctatctccgaaatcaataaaaggaaacaccaaaaacaaagctaacaccacaatcaaagacaaacctcct 11408342  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 83 - 130
Target Start/End: Complemental strand, 26237134 - 26237087
Alignment:
Q  83 caacaacataaacaaaagttgtatcaaatccttcaaacatcatcacaa 130  Q
    |||||| |||||||||||||||| ||||  ||||||||||||||||||    
T  26237134 caacaaaataaacaaaagttgtaccaaaatcttcaaacatcatcacaa 26237087  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 99
Target Start/End: Original strand, 49098282 - 49098320
Alignment:
Q  61 aaatcaaagataaccctcctcacaacaacataaacaaaa 99  Q
    |||||||||| |||||||| |||||||||||||||||||    
T  49098282 aaatcaaagacaaccctccgcacaacaacataaacaaaa 49098320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 61 - 134
Target Start/End: Complemental strand, 25444634 - 25444561
Alignment:
Q  61 aaatcaaagataaccctcctcacaacaacataaacaaaagttgtatcaaatccttcaaacatcatcacaagctg 134  Q
    |||||||||  || ||||| ||||||||||||||||||||||| |||||| || |||||||||||| |||||||    
T  25444634 aaatcaaaggaaaacctccgcacaacaacataaacaaaagttggatcaaaaccctcaaacatcatcgcaagctg 25444561  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 130
Target Start/End: Original strand, 6443498 - 6443619
Alignment:
Q  5 caaagggctatattctaaatcaataaaaggaaacacaaaaaacaaagctagcaccgaaatcaaagataaccctcctcacaacaacataaacaaaagttgt 104  Q
    ||||||||||| |   |||||||||||||||||||| ||||||||||||| ||||  ||||||||| || ||| | ||||||||| |    |||||||||    
T  6443498 caaagggctatctctaaaatcaataaaaggaaacaccaaaaacaaagctaacaccacaatcaaagacaaaccttcgcacaacaacgt----aaaagttgt 6443593  T
Q  105 atcaaatccttcaaacatcatcacaa 130  Q
    | ||||  | ||||||||||||||||    
T  6443594 accaaaatcctcaaacatcatcacaa 6443619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 134
Target Start/End: Complemental strand, 13995335 - 13995282
Alignment:
Q  81 cacaacaacataaacaaaagttgtatcaaatccttcaaacatcatcacaagctg 134  Q
    ||||||||||||||||||||||||| ||||||| ||||||||  ||||||||||    
T  13995335 cacaacaacataaacaaaagttgtaccaaatccctcaaacattctcacaagctg 13995282  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 132
Target Start/End: Original strand, 22577371 - 22577442
Alignment:
Q  61 aaatcaaagataaccctcctcacaacaacataaacaaaagttgtatcaaatccttcaaacatcatcacaagc 132  Q
    |||||||||| || ||||  ||||||||| |||||||| |||||| ||||||| ||||||||||||||||||    
T  22577371 aaatcaaagacaaacctctgcacaacaacgtaaacaaaggttgtaccaaatccctcaaacatcatcacaagc 22577442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 11139654 - 11139604
Alignment:
Q  1 ctaacaaagggctatattctaaatcaataaaaggaaacacaaaaaacaaag 51  Q
    ||||||||| ||||||||| |||||||||||||||||||| ||||||||||    
T  11139654 ctaacaaagagctatattcgaaatcaataaaaggaaacaccaaaaacaaag 11139604  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 130
Target Start/End: Complemental strand, 3524121 - 3524075
Alignment:
Q  84 aacaacataaacaaaagttgtatcaaatccttcaaacatcatcacaa 130  Q
    |||||||||||||||||||||| ||||  | ||||||||||||||||    
T  3524121 aacaacataaacaaaagttgtaccaaaatcctcaaacatcatcacaa 3524075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 120
Target Start/End: Complemental strand, 11139617 - 11139553
Alignment:
Q  56 caccgaaatcaaagataaccctcctcacaacaacataaacaaaagttgtatcaaatccttcaaac 120  Q
    |||| ||| |||||| |||||| | ||||||||||||||||||| || || ||||||| ||||||    
T  11139617 caccaaaaacaaagacaacccttcgcacaacaacataaacaaaatttataccaaatccctcaaac 11139553  T

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Target: scaffold0009 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 53949 - 54018
Alignment:
Q  1 ctaacaaagggctatattctaaatcaataaaaggaaacacaaaaaacaaagctagcaccgaaatcaaaga 70  Q
    ||||||||||| ||| | | |||||||||||||||||||| ||||||||||||  |||| ||||||||||    
T  53949 ctaacaaagggatatctccaaaatcaataaaaggaaacaccaaaaacaaagctgacaccaaaatcaaaga 54018  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 176
Target Start/End: Original strand, 17896892 - 17896925
Alignment:
Q  143 ttattcaccttaaaaaatgggaattctaaccact 176  Q
    ||||||||||||||||||| ||||||||||||||    
T  17896892 ttattcaccttaaaaaatgtgaattctaaccact 17896925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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