View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_low_89 (Length: 360)
Name: NF11745_low_89
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_low_89 |
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Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 15 - 345
Target Start/End: Complemental strand, 3187390 - 3187060
Alignment:
| Q |
15 |
aaagaatccctgataaaaagggggaaaatctagaaatgatagtacatattgcaatgaaatgtataatggaaggtagttgtaaattacttgtgcgaagatt |
114 |
Q |
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| T |
3187390 |
aaagaatccctgataaaaagggggaaaatctagaaatgatagtacatattgcaatgcaatgtataatagaaggtagttgtaaatcacttgtgcgaagatt |
3187291 |
T |
|
| Q |
115 |
accaagtagctactagttgttatgttctattttccaaataaagaatcaatctcaaggcaccaagtagctacatgtcttgtttgtggagataaatagataa |
214 |
Q |
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|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3187290 |
accatgtagctactagttgttaagttctattttccaaataaagaatcaatctcaaggcaccaagtagctacatgtcttgtttgtggagataaatagataa |
3187191 |
T |
|
| Q |
215 |
tggaacatagtagtgctgtttgttttataatgtttaatgttctttaacttctcatggaaatgggagatgtacaaataaatggttaaattatggcttatgc |
314 |
Q |
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| T |
3187190 |
tggaacatagtagtgctgtttgttttataatgtttaatgttctttaacttctcatggaaatgggagatgtacaaataaatggttaaattatggcttatgc |
3187091 |
T |
|
| Q |
315 |
tattctaactatcattgttgtctcaggtggc |
345 |
Q |
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| T |
3187090 |
tattctaactatcattgttgtctcaggtggc |
3187060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 15 - 248
Target Start/End: Complemental strand, 52801347 - 52801114
Alignment:
| Q |
15 |
aaagaatccctgataaaaagggggaaaatctagaaatgatagtacatattgcaatgaaatgtataatggaaggtagttgtaaattacttgtgcgaagatt |
114 |
Q |
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| T |
52801347 |
aaagaatccctgataaaaagggggaaaatctagaaatgatagtacatattgcaatgaaatgtataatagaaggtagtcgtaaatcacttgtgcgaagatt |
52801248 |
T |
|
| Q |
115 |
accaagtagctactagttgttatgttctattttccaaataaagaatcaatctcaaggcaccaagtagctacatgtcttgtttgtggagataaatagataa |
214 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
52801247 |
accaagtagctactagttgttaagttctattttccaaataaagaatcaatctcaaggcaccaagtagctacatgtcttgtttgtggagataaatagacaa |
52801148 |
T |
|
| Q |
215 |
tggaacatagtagtgctgtttgttttataatgtt |
248 |
Q |
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||||||||||||| |||||||||||||||||||| |
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| T |
52801147 |
tggaacatagtagcgctgtttgttttataatgtt |
52801114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 234 - 345
Target Start/End: Complemental strand, 52801095 - 52800984
Alignment:
| Q |
234 |
ttgttttataatgtttaatgttctttaacttctcatggaaatgggagatgtacaaataaatggttaaattatggcttatgctattctaactatcattgtt |
333 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
52801095 |
ttgttttataatgtttaatgttctttaacttctcatggaaatggaagatgtacaaataaatggttaaattatggcctatgctattctaactatcattgtt |
52800996 |
T |
|
| Q |
334 |
gtctcaggtggc |
345 |
Q |
| |
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|||||||||||| |
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| T |
52800995 |
gtctcaggtggc |
52800984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 22 - 255
Target Start/End: Original strand, 18886384 - 18886617
Alignment:
| Q |
22 |
ccctgataaaaagggggaaaatctagaaatgatagtacatattgcaatgaaatgtataatggaaggtagttgtaaattacttgtgcgaagattaccaagt |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||| |||||||||||||||||||||| |
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| T |
18886384 |
ccctgataaaaagggggaaaatctagaaatgatagtacatattgcaataaaatgtataatagaaggtagttataaatcacttgtgcgaagattaccaagt |
18886483 |
T |
|
| Q |
122 |
agctactagttgttatgttctattttccaaataaagaatcaatctcaaggcaccaagtagctacatgtcttgtttgtggagataaatagataatggaaca |
221 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| | || ||||||||| |
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| T |
18886484 |
agctactagttgttaagttctattttccaaataaagaatcaatctcaaggcaacaagcagctacatgtcttgtttgtggagatagacggacaatggaaca |
18886583 |
T |
|
| Q |
222 |
tagtagtgctgtttgttttataatgtttaatgtt |
255 |
Q |
| |
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||||||||||||||||||||| |||||||||||| |
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| T |
18886584 |
tagtagtgctgtttgttttattatgtttaatgtt |
18886617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 234 - 329
Target Start/End: Original strand, 18886901 - 18886997
Alignment:
| Q |
234 |
ttgttttataatgtttaatgttctttaacttctcatggaaatgggagatgtacaaat-aaatggttaaattatggcttatgctattctaactatcat |
329 |
Q |
| |
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||||||||||||||||| |||||||||| |||||||| || ||||||||| |||||| ||||||||| ||||||||||||||| ||||||||||||| |
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| T |
18886901 |
ttgttttataatgtttagtgttctttaaattctcatgcaagtgggagatgcacaaataaaatggttatattatggcttatgcttttctaactatcat |
18886997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 15 - 174
Target Start/End: Original strand, 3917372 - 3917531
Alignment:
| Q |
15 |
aaagaatccctgataaaaagggggaaaatctagaaatga-tagtacatattgcaatgaaatgtataatggaaggtagttgtaaattacttgtgcgaagat |
113 |
Q |
| |
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|||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |
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| T |
3917372 |
aaagaatctctgataaaa-gggggaaaatctagaaatgaatagtacatattgcaatgaaatgtataatagaaggtagttgtaaatcacttgtgcgaagat |
3917470 |
T |
|
| Q |
114 |
taccaagtagctactagttgttatgttctattttccaaataaagaatcaatctcaaggcac |
174 |
Q |
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||||||| ||||||||||||| | |||||||||||| |||||||||||||||||||||||| |
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| T |
3917471 |
taccaaggagctactagttgtcaagttctattttccgaataaagaatcaatctcaaggcac |
3917531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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