View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_low_9 (Length: 673)
Name: NF11745_low_9
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_low_9 |
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| [»] scaffold0004 (1 HSPs) |
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Alignment Details
Target: scaffold0004 (Bit Score: 601; Significance: 0; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 601; E-Value: 0
Query Start/End: Original strand, 20 - 657
Target Start/End: Complemental strand, 374744 - 374107
Alignment:
| Q |
20 |
aagcaatcaaagaaccagcaatgttcccgacagaagtatgagcattccaaattcccatgatcaaccctctcttccgctttccaaaccagttacccaaaac |
119 |
Q |
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| T |
374744 |
aagcaatcaaagaaccagcaatgttcccgacagaagtatgagcattccaaattcccatgatcaaccctctcttccgctttccaaaccagttacccaaaac |
374645 |
T |
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| Q |
120 |
cgcaactacggatggccatccagtggattgaaacaaaccagaaatcatttgaatgactaaataatagtagaaattgtgattgtttccccaaaaccctaca |
219 |
Q |
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| T |
374644 |
cgcaactacggatggccatccagtggattgaaacaaaccagcaatcatttgaatgactaaataatagtagaaattgtgattgtttccccaaaaccctaca |
374545 |
T |
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| Q |
220 |
ccaaagagtgaagtgaaaacaccagttccaaccatcccaatagttnnnnnnntcctcaaattacacctgtcaccaaaatgtccagaaaagtacatcccaa |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
374544 |
ccaaagagtgaagtgaaaacaccagttccaaccatcccaatagttaaaaaaatcctcaaattacacctgtcaccaaaatgtccagaaaagtacatcccaa |
374445 |
T |
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| Q |
320 |
atgcataaactgcgagaaaagcaacatccaattggccaagaagggatgtcccgtcggatccattaaatggagcccagccatctccaagtttccaagaaag |
419 |
Q |
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| T |
374444 |
atgcataaactgcgagaaaagcaacatccaattggccaagaagggatgtcccgtcggatccattaaatggagcccagccatctccaagtttccaagaaag |
374345 |
T |
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| Q |
420 |
ttttgtaaccctcgtactcgaaggaaagaaattgaagcctaaatttgttgaagatgattggggatcaagaacactctttacaatactagtggtttttcta |
519 |
Q |
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| T |
374344 |
ttttgtaaccctcgtactcgaaggaaagaaattgaagcctaaatttgttgaagatgattggggatcaagcacactcttcacaatactagtggtttttcta |
374245 |
T |
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| Q |
520 |
gttgcgtgataactagcataagctagaaatgttacaatcagaacaattgcttggtgggttttgtgggaaacaggacttccttttacatactcaaggaacc |
619 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
374244 |
gtggcgtgataactagcataagctagaaatgttacaatcagaacaattgcttggtgggttttgtgggaaacaggacttccttttacatactcaaggaacc |
374145 |
T |
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| Q |
620 |
ttattccaatgagtttattgctactgctacccctctct |
657 |
Q |
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| T |
374144 |
ttattccaatgagtttattgctactgctacccctctct |
374107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 30 - 170
Target Start/End: Complemental strand, 41288263 - 41288123
Alignment:
| Q |
30 |
agaaccagcaatgttcccgacagaagtatgagcattccaaattcccatgatcaaccctctcttccgctttccaaaccagttacccaaaaccgcaactacg |
129 |
Q |
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||||||| ||| ||||| ||||||||||| ||||||||||| ||||| ||||| |||||||||| ||| |||||||||||||| | ||| || || || |
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| T |
41288263 |
agaaccactaatattcccaacagaagtatgtgcattccaaatacccattatcaaacctctcttcctcttcccaaaccagttaccgataacggcgacgacc |
41288164 |
T |
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| Q |
130 |
gatggccatccagtggattgaaacaaaccagaaatcatttg |
170 |
Q |
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| T |
41288163 |
gacggccaacccgtcgcttgaaacaacccagcaatcatttg |
41288123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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