View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11745_low_91 (Length: 358)
Name: NF11745_low_91
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_low_91 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 155; Significance: 3e-82; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 103 - 273
Target Start/End: Original strand, 30515596 - 30515766
Alignment:
| Q |
103 |
aactaattactaacttttgtcaataagaaaaacacattggaacccatgatctcatatttcatggctaagtttttatgttaccatgtatgtaccgtcattt |
202 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
30515596 |
aactaattactaacttttgtcattaagaaaaacacattggaacccatgatctcatatttcatggctaagtttttttgttaccatgtatgtaccgtcattt |
30515695 |
T |
|
| Q |
203 |
tatgatgactaatctccgtcaataaattcattgtgcacacattgtggattctctcctcccaatccgacttt |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
30515696 |
catgatgactaatctccgtcaataaattcattgtgcacacattgtggattctctcctcccaatcggacttt |
30515766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 30515426 - 30515480
Alignment:
| Q |
2 |
cataaggtccaagaaaattcttctaactatattgattggttgcatagtatccaaa |
56 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30515426 |
cataaggtccgagaaaattcttctaactatattgattggttgcatagtatccaaa |
30515480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 266 - 337
Target Start/End: Original strand, 30515362 - 30515435
Alignment:
| Q |
266 |
ccgactttgttttattggtaatctcctgagcatcatagagatcgttg--tatggtaccgtttgccataaggtcc |
337 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||| | | |||||| |||||||||||||||| |
|
|
| T |
30515362 |
ccgactttgttttattggtaatctcctgagcagcatagagatcgtcgcatgtggtacggtttgccataaggtcc |
30515435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 102
Target Start/End: Original strand, 30515525 - 30515553
Alignment:
| Q |
74 |
taaaccacgcttgaatccgtgttgggtaa |
102 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
30515525 |
taaaccacgcttgaatccgtgttgggtaa |
30515553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University