View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_low_92 (Length: 357)
Name: NF11745_low_92
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_low_92 |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 17 - 272
Target Start/End: Complemental strand, 6562389 - 6562134
Alignment:
| Q |
17 |
acttaggattttcaacacacctctctctattcggtgccgtttctatttccgtgttttttgtttcccaacaattttcttactaaccaaacatcatcaactt |
116 |
Q |
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| T |
6562389 |
acttgggattttcaacacacctctctctattcggtgccgtttctatttccgtgttttttgtttcccaacaattttcttactaaccaaacatcatcaactt |
6562290 |
T |
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| Q |
117 |
tctcggtgagattccttgtcactaactaacaatgttgttgttttctacttccatttttagtgttgactttgtttttgccgtgtttagtagtattcatttt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6562289 |
tctcggtgagattccttgtcactaactaacaatgttgttgttttctacttccatttttagtgttgactttgtttttgccgtgtttagtagtattcatttt |
6562190 |
T |
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| Q |
217 |
ctgggctaatgacaagttacagtctttgatgataatgtagccataactagctaccc |
272 |
Q |
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| T |
6562189 |
ctgggctaatgacaagttacaatctttgatgataatgtagccataactagccaccc |
6562134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 303 - 348
Target Start/End: Complemental strand, 6562103 - 6562058
Alignment:
| Q |
303 |
cttcttcactaaagtgtgatttttcatatgatgtgtttcatctcat |
348 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
6562103 |
cttcttcactaaagtgtgatttttcatatgatgtgtttcatttcat |
6562058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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