View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_low_93 (Length: 357)
Name: NF11745_low_93
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_low_93 |
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Alignment Details
Target: chr1 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 170 - 307
Target Start/End: Original strand, 27470506 - 27470643
Alignment:
| Q |
170 |
gtagcgaaattcggagagagtagttgaaaacaagctagactatagccagcaagcaaaagagcgtttagagtttgatttatttaccacctacaacacttga |
269 |
Q |
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|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27470506 |
gtagagaaatttggagagagtagttgaaaacaagctagactatagccagcaagcaaaagagcgtttagagtttgatttatttaccacctacaacacttga |
27470605 |
T |
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| Q |
270 |
ctttattctcattctttcaactttcaattcaacaaggt |
307 |
Q |
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| T |
27470606 |
ctttattctcattctttcaactttcaattcaacaaggt |
27470643 |
T |
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Target: chr1; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 27470372 - 27470472
Alignment:
| Q |
18 |
ataaagatcatctcacaatcatcatcttcttcttcaatctttgagcctaataaaagacaaagaacaagttaacgagtttaagatccaatcaatatatatt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27470372 |
ataaagatcatctcacaatcatcatcttcttcttcaatctttgagcctaataaaagacaaagaacaagttaacgagtttaagatccaatcaatatatatt |
27470471 |
T |
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| Q |
118 |
a |
118 |
Q |
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| T |
27470472 |
a |
27470472 |
T |
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