View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_low_94 (Length: 357)
Name: NF11745_low_94
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_low_94 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 64 - 357
Target Start/End: Original strand, 44527381 - 44527674
Alignment:
| Q |
64 |
gtaagcaaatatatgtagataaccacttatttaagtaagaagaaagcgaaataaacagtgaggggtgactccaatgctaaaaataaccaaaaaacaccca |
163 |
Q |
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| T |
44527381 |
gtaagcaaatatatgtagataaccacttatttaagtaagaagaaagcgaaataaacggtgaggggtgactccaatgctaaaaataaccaaaaaacaccca |
44527480 |
T |
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| Q |
164 |
ctagggtgggagaataaaaggagagaaaagttgagagaatgctgcacgcggctaaccctaaaagttgagagaacgcgaaaacgcaccactttatgactcg |
263 |
Q |
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| T |
44527481 |
ctaggttggaagaataaaaggagagaaaagttgagagaatgctgcacgcggctaaccctaaaagttgagagaacgcgaaaacgcaccactttatgactcg |
44527580 |
T |
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| Q |
264 |
tcggcttattattcaatttgaaacatcattaaatataagcccctaaatcaatgctgaaaaaagttatggaataattttctctattcaataatat |
357 |
Q |
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| T |
44527581 |
tcggcttattattcaatttgaaacatcattaaatataaacccctaaatcaatgctgaaaaaagttatggaataattttctctattctataatat |
44527674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 44527320 - 44527360
Alignment:
| Q |
4 |
caacgaacagacacaacaccatactaagacgatgaacactt |
44 |
Q |
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| T |
44527320 |
caacgaacagacacaacaccatactaagacgatgaacactt |
44527360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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