View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_low_96 (Length: 354)
Name: NF11745_low_96
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_low_96 |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-137; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 45734904 - 45735238
Alignment:
| Q |
1 |
gaaagcttaatttcggcaggttgagggaattgaagactatgagatgacatttgcagaatcaagggaatttgtccaatctgaaggcagtactgattctttt |
100 |
Q |
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| T |
45734904 |
gaaagcttaattttggcaggttgagggaattgaagactatgagatgacatttgcagaatcaagggaatgtgtccaatctgaaggcagtactgattctttt |
45735003 |
T |
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| Q |
101 |
gcttttcctgtgtaagtcaatcttatattatcaatcaatcctaatcgtcagtcgtctatgtgnnnnnnnttatattgnnnnnnnctttggannnnnnnaa |
200 |
Q |
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| T |
45735004 |
gcttttcctgtgtaagtcaatcttatattatcaatcaatcctaatcgtcagtcgtctatgtgaaaaaaattatattgtttttttctttgga-ggggggaa |
45735102 |
T |
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| Q |
201 |
atatattgttaatcggtcattattgtcgtattcaaaacgttagatttcaatcataactagttttgggatttgttgatgtattattttacactaacgtcta |
300 |
Q |
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| T |
45735103 |
atatattattaatcggtcattattgtcatattcaaaacgttagatttcaatcataactagttttgggatttgttgatgtattattttacactgacgtcta |
45735202 |
T |
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| Q |
301 |
tcaaaatgaaactcatatataataatgggccatgtg |
336 |
Q |
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| T |
45735203 |
tcaaaatgaaactcatatataataatgggccatgtg |
45735238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 16 - 150
Target Start/End: Original strand, 45746179 - 45746313
Alignment:
| Q |
16 |
gcaggttgagggaattgaagactatgagatgacatttgcagaatcaagggaatttgtccaatctgaaggcagtactgattcttttgcttttcctgtgtaa |
115 |
Q |
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| T |
45746179 |
gcaggttgagggaattgaagactatgagatgtcatttgcaaaatcaagggactctgtccaatctgaaggcagtactgattcttttgctttccctgtgtaa |
45746278 |
T |
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| Q |
116 |
gtcaatcttatattatcaatcaatcctaatcgtca |
150 |
Q |
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| T |
45746279 |
gtcaatcttatattatcaatcaatcataatcgtca |
45746313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 202 - 319
Target Start/End: Original strand, 45746367 - 45746485
Alignment:
| Q |
202 |
tatattgttaatcggtcattattgtcgtattcaaaacgttagatttcaatcataactagttttgggatttgttgat-gtattattttacactaacgtcta |
300 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||| || |
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| T |
45746367 |
tatattgttaatcggtcattattgtcatattcaaaacgttagatttcaatcataactagttttgtgatttgttgatggtgttattttacactaacgtgta |
45746466 |
T |
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| Q |
301 |
tcaaaatgaaactcatata |
319 |
Q |
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|| |||| ||||||||||| |
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| T |
45746467 |
tctaaattaaactcatata |
45746485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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