View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11746_high_12 (Length: 494)
Name: NF11746_high_12
Description: NF11746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11746_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 66 - 478
Target Start/End: Original strand, 38791860 - 38792271
Alignment:
| Q |
66 |
tgaacattattttctctaggtccacgaaagtaaccctttcattttcatttcggtcacatctaataataagttggttattgttgactgttgcgtggtatgc |
165 |
Q |
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| T |
38791860 |
tgaacattattttctctaggtccacgaaagtaaccctttcattttcatttcg-tcacatctaataataagttggttattgttgactgttgcgtggtatgc |
38791958 |
T |
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| Q |
166 |
tgttccttcggttgaaaactaccccttcattaccagctagcatcaaatacttatcttttcttgtaagctttgtacactcaaatcccaaagtgttaccgat |
265 |
Q |
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| T |
38791959 |
tgttccttcggttgaaaactaccccttcattaccagctagcatcaaatacttatcttttcttgtaagctttgtacactcaaatcccaaagtgttaccgat |
38792058 |
T |
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| Q |
266 |
ctccgcttgaatatggttcgccacttcaaacctacattcctcagcattctcgctaactcgtggaaattgtgaaggacgaacttgggtcagtaactcaacc |
365 |
Q |
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| T |
38792059 |
ctccgcttgaatatggttcgccacttcaaacctacattcctcagcattctcgctaactcgtggaaattgtgaaggacgaacttgggtcagtaactcaacc |
38792158 |
T |
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| Q |
366 |
gtgtaagccgggaaaggatcggcgaggnnnnnnnccgggtccaaagcctttagaccgctagcagttgtgccataaaacatgctgacgtgtgtatcaacag |
465 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38792159 |
gtgtaagccgggaaaggatcggcgaggaaaaaaaccgggtccaaagcctttagaccgctagcagttgtgccataaaacatgctgacgtgtgtatcaacag |
38792258 |
T |
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| Q |
466 |
caactggtgttat |
478 |
Q |
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| T |
38792259 |
caactggtgttat |
38792271 |
T |
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