View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11746_high_18 (Length: 411)
Name: NF11746_high_18
Description: NF11746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11746_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 16 - 398
Target Start/End: Complemental strand, 37582122 - 37581744
Alignment:
| Q |
16 |
caaatgtgatccaaaaccaagaaagtcacgttcagttgttaccgtaatttaaattatgttgatacctcttttacgttgctctatttatctattaattttc |
115 |
Q |
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| T |
37582122 |
caaatgtgatccaaaaccaagaaagtcacgttcagttgttaccgtaatttaaattatgttgatacctcttttacgttgctcaatttatctattaattttc |
37582023 |
T |
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| Q |
116 |
tttcatatttctttatttcagaaaatgaaccaaaa---------gtcatggtgaatttcccatcatagcatttagcatcaatgaatccaaatcccttctc |
206 |
Q |
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|||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37582022 |
tttcat-----------tcagaaaatgaaccaaaatacacaaaagtcatggtgaatttcccatcatagcatttagcatcaatgaatccaaatcccttc-- |
37581936 |
T |
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| Q |
207 |
catataatgacaggaattaggacaggtacatcaacaaaggtggcagggtcagccaaggggtatatgtatggttaaacttaaatggcacccttcgcctctt |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37581935 |
catataatgacaggaattaggacaggtacatcaacaaaggtggcggggtcagccaaggggtatatgtatggttaaacttaaatggcacccttcgcctctt |
37581836 |
T |
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| Q |
307 |
ctttgacaacttttgtccattctcccattaaaggacacgtgtggtacagcaaagtagtagttgttgtatctgtacagcaacagctcttccct |
398 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37581835 |
ctttgagaacttttgtccattctcccattaaaggacacgtgtggtacagcaaagtagtagttgttgtatctgtacagcaacagctcttccct |
37581744 |
T |
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