View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11746_high_23 (Length: 362)

Name: NF11746_high_23
Description: NF11746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11746_high_23
NF11746_high_23
[»] chr6 (15 HSPs)
chr6 (287-362)||(4617035-4617109)
chr6 (293-359)||(4299788-4299853)
chr6 (315-362)||(4625991-4626038)
chr6 (293-359)||(4267214-4267279)
chr6 (305-362)||(4480723-4480780)
chr6 (305-362)||(4504442-4504499)
chr6 (293-362)||(4516340-4516408)
chr6 (293-362)||(4570991-4571059)
chr6 (305-362)||(4592261-4592318)
chr6 (305-362)||(4613763-4613820)
chr6 (309-362)||(3171775-3171828)
chr6 (305-334)||(4492985-4493014)
chr6 (293-334)||(4505876-4505916)
chr6 (293-362)||(4601808-4601876)
chr6 (295-359)||(4260202-4260265)
[»] chr8 (1 HSPs)
chr8 (305-362)||(1674256-1674313)
[»] scaffold0477 (1 HSPs)
scaffold0477 (305-362)||(4731-4788)
[»] scaffold0288 (1 HSPs)
scaffold0288 (293-362)||(3764-3832)
[»] chr5 (2 HSPs)
chr5 (305-358)||(28000148-28000201)
chr5 (293-362)||(24103018-24103086)
[»] chr7 (1 HSPs)
chr7 (293-362)||(3086439-3086507)
[»] chr3 (1 HSPs)
chr3 (305-352)||(1281144-1281191)


Alignment Details
Target: chr6 (Bit Score: 52; Significance: 9e-21; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 287 - 362
Target Start/End: Original strand, 4617035 - 4617109
Alignment:
Q  287 aacaaatccttaataacttttgtccaagttcatgtatgaacaaccacctgaactagtgttctcctctgccttcttc 362  Q
    |||| ||||||||||||||| || ||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  4617035 aacacatccttaataacttt-gttcaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttc 4617109  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 293 - 359
Target Start/End: Complemental strand, 4299853 - 4299788
Alignment:
Q  293 tccttaataacttttgtccaagttcatgtatgaacaaccacctgaactagtgttctcctctgccttc 359  Q
    |||||||||||||| ||||||||||||||| ||||||||||||| | ||||||||||||||||||||    
T  4299853 tccttaataacttt-gtccaagttcatgtacgaacaaccacctggattagtgttctcctctgccttc 4299788  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 315 - 362
Target Start/End: Original strand, 4625991 - 4626038
Alignment:
Q  315 ttcatgtatgaacaaccacctgaactagtgttctcctctgccttcttc 362  Q
    |||||||||||||||||||| | |||| ||||||||||||||||||||    
T  4625991 ttcatgtatgaacaaccaccgggactaatgttctcctctgccttcttc 4626038  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 293 - 359
Target Start/End: Complemental strand, 4267279 - 4267214
Alignment:
Q  293 tccttaataacttttgtccaagttcatgtatgaacaaccacctgaactagtgttctcctctgccttc 359  Q
    |||||||||||||| ||||||||||||||||||| ||||||| |  || |||||||| |||||||||    
T  4267279 tccttaataacttt-gtccaagttcatgtatgaaaaaccaccaggtcttgtgttctcttctgccttc 4267214  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 305 - 362
Target Start/End: Original strand, 4480723 - 4480780
Alignment:
Q  305 tttgtccaagttcatgtatgaacaaccacctgaactagtgttctcctctgccttcttc 362  Q
    |||||||||||||||||||||||||||||| |  || |||| |||||||||| |||||    
T  4480723 tttgtccaagttcatgtatgaacaaccaccaggtcttgtgtcctcctctgccatcttc 4480780  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 305 - 362
Target Start/End: Complemental strand, 4504499 - 4504442
Alignment:
Q  305 tttgtccaagttcatgtatgaacaaccacctgaactagtgttctcctctgccttcttc 362  Q
    ||||||||||||||||||||||||||||||    || |||| ||||||||||||||||    
T  4504499 tttgtccaagttcatgtatgaacaaccaccaagtcttgtgtcctcctctgccttcttc 4504442  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 293 - 362
Target Start/End: Original strand, 4516340 - 4516408
Alignment:
Q  293 tccttaataacttttgtccaagttcatgtatgaacaaccacctgaactagtgttctcctctgccttcttc 362  Q
    |||||||| |||||| ||||||||||  ||||||||||||||||  || |||| ||||||||||||||||    
T  4516340 tccttaatcactttt-tccaagttcacatatgaacaaccacctggtcttgtgtcctcctctgccttcttc 4516408  T

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Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 293 - 362
Target Start/End: Original strand, 4570991 - 4571059
Alignment:
Q  293 tccttaataacttttgtccaagttcatgtatgaacaaccacctgaactagtgttctcctctgccttcttc 362  Q
    |||||||| |||||| |||||||||||||||||||||||||| |  || |||| |||||| |||||||||    
T  4570991 tccttaatcactttt-tccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcttc 4571059  T

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Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 305 - 362
Target Start/End: Original strand, 4592261 - 4592318
Alignment:
Q  305 tttgtccaagttcatgtatgaacaaccacctgaactagtgttctcctctgccttcttc 362  Q
    ||||||||||||||| ||||||||||| || |  || |||||||||||||||||||||    
T  4592261 tttgtccaagttcatatatgaacaacctccaggtctcgtgttctcctctgccttcttc 4592318  T

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Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 305 - 362
Target Start/End: Complemental strand, 4613820 - 4613763
Alignment:
Q  305 tttgtccaagttcatgtatgaacaaccacctgaactagtgttctcctctgccttcttc 362  Q
    ||||||||||||||| ||||||||||| ||||  || |||| ||||||||||||||||    
T  4613820 tttgtccaagttcatatatgaacaacctcctggtctcgtgtcctcctctgccttcttc 4613763  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 362
Target Start/End: Original strand, 3171775 - 3171828
Alignment:
Q  309 tccaagttcatgtatgaacaaccacctgaactagtgttctcctctgccttcttc 362  Q
    ||||||||||||||||||||||||||  | || || | ||||||||||||||||    
T  3171775 tccaagttcatgtatgaacaaccaccaaatcttgtatcctcctctgccttcttc 3171828  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Original strand, 4492985 - 4493014
Alignment:
Q  305 tttgtccaagttcatgtatgaacaaccacc 334  Q
    ||||||||||||||||||||||||||||||    
T  4492985 tttgtccaagttcatgtatgaacaaccacc 4493014  T

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Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 4505876 - 4505916
Alignment:
Q  293 tccttaataacttttgtccaagttcatgtatgaacaaccacc 334  Q
    |||||||||||||| ||||||||||||| |||||||||||||    
T  4505876 tccttaataacttt-gtccaagttcatgaatgaacaaccacc 4505916  T

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Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 362
Target Start/End: Original strand, 4601808 - 4601876
Alignment:
Q  293 tccttaataacttttgtccaagttcatgtatgaacaaccacctgaactagtgttctcctctgccttcttc 362  Q
    |||||||||||||| ||||| |||| |||||||||||||||||   |||||| |||||| |||| |||||    
T  4601808 tccttaataacttt-gtccaggttcttgtatgaacaaccacctagtctagtgctctcctttgccatcttc 4601876  T

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Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 359
Target Start/End: Complemental strand, 4260265 - 4260202
Alignment:
Q  295 cttaataacttttgtccaagttcatgtatgaacaaccacctgaactagtgttctcctctgccttc 359  Q
    |||||||||||| ||||||||||||  ||||| |||||  || ||| ||||||||||||||||||    
T  4260265 cttaataacttt-gtccaagttcatcaatgaataaccagatggactggtgttctcctctgccttc 4260202  T

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Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 305 - 362
Target Start/End: Original strand, 1674256 - 1674313
Alignment:
Q  305 tttgtccaagttcatgtatgaacaaccacctgaactagtgttctcctctgccttcttc 362  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  1674256 tttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttc 1674313  T

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Target: scaffold0477 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 305 - 362
Target Start/End: Complemental strand, 4788 - 4731
Alignment:
Q  305 tttgtccaagttcatgtatgaacaaccacctgaactagtgttctcctctgccttcttc 362  Q
    |||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||    
T  4788 tttgtccaagttcatgtatgaacagccaccagaactggtgttctcctctgccttcttc 4731  T

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Target: scaffold0288 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 293 - 362
Target Start/End: Complemental strand, 3832 - 3764
Alignment:
Q  293 tccttaataacttttgtccaagttcatgtatgaacaaccacctgaactagtgttctcctctgccttcttc 362  Q
    |||||||||||||| ||||| |||||||||||||| ||||||||  ||||||||||||||||||||||||    
T  3832 tccttaataacttt-gtccaggttcatgtatgaacgaccacctggtctagtgttctcctctgccttcttc 3764  T

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Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 305 - 358
Target Start/End: Complemental strand, 28000201 - 28000148
Alignment:
Q  305 tttgtccaagttcatgtatgaacaaccacctgaactagtgttctcctctgcctt 358  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  28000201 tttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgcctt 28000148  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 293 - 362
Target Start/End: Original strand, 24103018 - 24103086
Alignment:
Q  293 tccttaataacttttgtccaagttcatgtatgaacaaccacctgaactagtgttctcctctgccttcttc 362  Q
    |||||||||||||| ||||||||||||||||||| ||||||| || || |||||||| ||||||||||||    
T  24103018 tccttaataacttt-gtccaagttcatgtatgaaaaaccaccagatcttgtgttctcttctgccttcttc 24103086  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 293 - 362
Target Start/End: Original strand, 3086439 - 3086507
Alignment:
Q  293 tccttaataacttttgtccaagttcatgtatgaacaaccacctgaactagtgttctcctctgccttcttc 362  Q
    |||||||||||||| |||||||||||||||||||||||||||   ||| |||||||| ||||| ||||||    
T  3086439 tccttaataacttt-gtccaagttcatgtatgaacaaccaccgatactggtgttctcttctgctttcttc 3086507  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 305 - 352
Target Start/End: Original strand, 1281144 - 1281191
Alignment:
Q  305 tttgtccaagttcatgtatgaacaaccacctgaactagtgttctcctc 352  Q
    |||||| ||||||||||||||||||||||| |  ||||||||||||||    
T  1281144 tttgtcgaagttcatgtatgaacaaccacccggtctagtgttctcctc 1281191  T

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