View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11746_high_24 (Length: 360)

Name: NF11746_high_24
Description: NF11746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11746_high_24
NF11746_high_24
[»] chr3 (3 HSPs)
chr3 (51-324)||(50549717-50549985)
chr3 (322-360)||(47677338-47677376)
chr3 (304-360)||(18321734-18321790)
[»] chr1 (4 HSPs)
chr1 (311-360)||(1819495-1819544)
chr1 (322-360)||(9157393-9157431)
chr1 (303-360)||(4609079-4609136)
chr1 (302-354)||(5694887-5694939)
[»] chr2 (2 HSPs)
chr2 (304-360)||(15011363-15011419)
chr2 (322-360)||(14464572-14464610)
[»] chr8 (1 HSPs)
chr8 (322-352)||(8243405-8243435)
[»] chr5 (3 HSPs)
chr5 (322-360)||(16439221-16439259)
chr5 (318-360)||(16802527-16802569)
chr5 (332-360)||(32485632-32485660)
[»] chr4 (4 HSPs)
chr4 (322-360)||(55089894-55089932)
chr4 (322-360)||(55090013-55090051)
chr4 (322-360)||(55090079-55090117)
chr4 (300-352)||(47404676-47404728)
[»] chr7 (1 HSPs)
chr7 (299-352)||(30165338-30165391)


Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 51 - 324
Target Start/End: Original strand, 50549717 - 50549985
Alignment:
Q  51 tgggaatgtgacaaactacaagtggtgatgatggatgcatgcatgtaaactcatattgccaggcatgatatataattaaaatttctcactttctggccaa 150  Q
    |||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50549717 tgggaatgtgacaaactacaagtggtgat---ggatgcatgcatgtaaactcatattgccaggcatgatatataattaaaatttctcactttctggccaa 50549813  T
Q  151 tatatatattggaaaagagttgatgcaattttatttta-tttttgacaagaaagagttggagcacttatgaacttgaattggtgattttcttttggaatt 249  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  50549814 tatatatattggaaaagagttgatgcaattttattttattttttgacaagaaagagtaggagcacttatgaacttgaattggtgattttcttttggaatt 50549913  T
Q  250 tttcagagaatgaaactccatcatcaccactggacatattaaatattgatagtcggataatacttgaatgatata 324  Q
    ||| ||||||||||||||   ||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  50549914 ttttagagaatgaaactc---catcaccactggacatattaaatattgattgtcggataatacttgagtgatata 50549985  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 360
Target Start/End: Complemental strand, 47677376 - 47677338
Alignment:
Q  322 atagagttgagtgacattgatcaatcacaatatcacaat 360  Q
    ||||||||| ||||||||||||||||||||| |||||||    
T  47677376 atagagttgggtgacattgatcaatcacaatgtcacaat 47677338  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 360
Target Start/End: Complemental strand, 18321790 - 18321734
Alignment:
Q  304 ggataatacttgaatgatatagagttgagtgacattgatcaatcacaatatcacaat 360  Q
    |||||| ||||| |||| |||||||||  |||||||| ||||||||||| |||||||    
T  18321790 ggataacacttggatgacatagagttggatgacattggtcaatcacaatgtcacaat 18321734  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 311 - 360
Target Start/End: Original strand, 1819495 - 1819544
Alignment:
Q  311 acttgaatgatatagagttgagtgacattgatcaatcacaatatcacaat 360  Q
    |||||||||| ||||||||| ||||||||||||||||||||| |||||||    
T  1819495 acttgaatgacatagagttgggtgacattgatcaatcacaatgtcacaat 1819544  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 360
Target Start/End: Complemental strand, 9157431 - 9157393
Alignment:
Q  322 atagagttgagtgacattgatcaatcacaatatcacaat 360  Q
    |||||||||  ||||||||||||||||||||||||||||    
T  9157431 atagagttggttgacattgatcaatcacaatatcacaat 9157393  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 360
Target Start/End: Complemental strand, 4609136 - 4609079
Alignment:
Q  303 cggataatacttgaatgatatagagttgagtgacattgatcaatcacaatatcacaat 360  Q
    |||||| ||||||  ||| ||||||||| ||||||||| ||||||||||| |||||||    
T  4609136 cggatagtacttgtgtgacatagagttgggtgacattggtcaatcacaatgtcacaat 4609079  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 354
Target Start/End: Original strand, 5694887 - 5694939
Alignment:
Q  302 tcggataatacttgaatgatatagagttgagtgacattgatcaatcacaatat 354  Q
    |||||||| |||||| ||| ||||||||  ||||||||| |||||||||||||    
T  5694887 tcggataacacttgagtgacatagagtttggtgacattggtcaatcacaatat 5694939  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 360
Target Start/End: Complemental strand, 15011419 - 15011363
Alignment:
Q  304 ggataatacttgaatgatatagagttgagtgacattgatcaatcacaatatcacaat 360  Q
    ||||||||||||  ||| |||||||||||||||||||  |||||||||| |||||||    
T  15011419 ggataatacttgggtgacatagagttgagtgacattggccaatcacaatgtcacaat 15011363  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 360
Target Start/End: Original strand, 14464572 - 14464610
Alignment:
Q  322 atagagttgagtgacattgatcaatcacaatatcacaat 360  Q
    ||||||||||||||||||| ||||||||||| |||||||    
T  14464572 atagagttgagtgacattggtcaatcacaatgtcacaat 14464610  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 352
Target Start/End: Original strand, 8243405 - 8243435
Alignment:
Q  322 atagagttgagtgacattgatcaatcacaat 352  Q
    |||||||||||||||||||||||||||||||    
T  8243405 atagagttgagtgacattgatcaatcacaat 8243435  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 360
Target Start/End: Complemental strand, 16439259 - 16439221
Alignment:
Q  322 atagagttgagtgacattgatcaatcacaatatcacaat 360  Q
    ||||||||| ||||||||||||||||||||| |||||||    
T  16439259 atagagttgggtgacattgatcaatcacaatgtcacaat 16439221  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 318 - 360
Target Start/End: Complemental strand, 16802569 - 16802527
Alignment:
Q  318 tgatatagagttgagtgacattgatcaatcacaatatcacaat 360  Q
    |||||||||||||||||||||||| |||||| ||| |||||||    
T  16802569 tgatatagagttgagtgacattgaccaatcagaatgtcacaat 16802527  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 332 - 360
Target Start/End: Complemental strand, 32485660 - 32485632
Alignment:
Q  332 gtgacattgatcaatcacaatatcacaat 360  Q
    |||||||||||||||||||||||||||||    
T  32485660 gtgacattgatcaatcacaatatcacaat 32485632  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 360
Target Start/End: Original strand, 55089894 - 55089932
Alignment:
Q  322 atagagttgagtgacattgatcaatcacaatatcacaat 360  Q
    ||||||||||||||||||| ||||||||||| |||||||    
T  55089894 atagagttgagtgacattggtcaatcacaatgtcacaat 55089932  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 360
Target Start/End: Original strand, 55090013 - 55090051
Alignment:
Q  322 atagagttgagtgacattgatcaatcacaatatcacaat 360  Q
    ||||||||||||||||||| ||||||||||| |||||||    
T  55090013 atagagttgagtgacattggtcaatcacaatgtcacaat 55090051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 360
Target Start/End: Complemental strand, 55090117 - 55090079
Alignment:
Q  322 atagagttgagtgacattgatcaatcacaatatcacaat 360  Q
    ||||||||||||||||||| ||||||||||| |||||||    
T  55090117 atagagttgagtgacattggtcaatcacaatgtcacaat 55090079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 352
Target Start/End: Complemental strand, 47404728 - 47404676
Alignment:
Q  300 agtcggataatacttgaatgatatagagttgagtgacattgatcaatcacaat 352  Q
    ||||||| ||||||||  ||| ||||||||| ||||||||| |||||||||||    
T  47404728 agtcggaaaatacttgggtgacatagagttgggtgacattggtcaatcacaat 47404676  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 352
Target Start/End: Complemental strand, 30165391 - 30165338
Alignment:
Q  299 tagtcggataatacttgaatgatatagagttgagtgacattgatcaatcacaat 352  Q
    ||||||||||  |||||  ||||||||||||| ||||||||| |||||||||||    
T  30165391 tagtcggataggacttgtgtgatatagagttgggtgacattggtcaatcacaat 30165338  T

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