View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11746_high_25 (Length: 358)
Name: NF11746_high_25
Description: NF11746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11746_high_25 |
 | |
|
| [»] scaffold0274 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 6 - 341
Target Start/End: Original strand, 1219750 - 1220099
Alignment:
| Q |
6 |
aaggcagtttcttgctgatgtgcttttgcttccaaggatgaaactttattaactcctcccgacaatgaatgaactccagtggcatggctattagagctac |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1219750 |
aaggcagtttcttgctgatgtgcttttgcttccaaggatgaaactttattaactcctcccgacaatgaatgaactccagtggcatggctattagagctac |
1219849 |
T |
|
| Q |
106 |
taggtagagta--------------aagatgatccacatgcaaattggttaatgtcttgcgtggcactttagttaaagtctcacgtggaactccaattga |
191 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1219850 |
taggtagagtagaggacctttgcaaaagatgatccacatgcaaattggttaatgtcttgcgtggcactttagttaaagtctcacgtggaactccaattga |
1219949 |
T |
|
| Q |
192 |
atcttcactaattgttccatctttttccatgccaggcacaacttgttgatcgccgtaaccctcatgaatggtttcaagtgcctctcccttgccatgatta |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1219950 |
atcttcactaattgttccatctttttccatgccaggcacaacttgttgatcaccgtaaccctcatgaatggtttcaagtgcctctcccttgccatgatta |
1220049 |
T |
|
| Q |
292 |
cgacttatttcaccaagtaccattaaatcaacattattttcgatgtcgtt |
341 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1220050 |
cgacttatttcaccaagtaccattaaatcaacattattttcgatgtcgtt |
1220099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 13 - 113
Target Start/End: Complemental strand, 2004839 - 2004739
Alignment:
| Q |
13 |
tttcttgctgatgtgcttttgcttccaaggatgaaactttattaactcctcccgacaatgaatgaactccagtggcatggctattagagctactaggtag |
112 |
Q |
| |
|
||||||||||||| ||||||| ||||| |||||| ||| |||||||| || | ||||||||||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
2004839 |
tttcttgctgatgcgcttttggttccagggatgagactctattaacttctgctgacaatgaatgaactccagtggcatagctgttagagctactaggtag |
2004740 |
T |
|
| Q |
113 |
a |
113 |
Q |
| |
|
| |
|
|
| T |
2004739 |
a |
2004739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 228 - 321
Target Start/End: Complemental strand, 33362347 - 33362254
Alignment:
| Q |
228 |
cacaacttgttgatcgccgtaaccctcatgaatggtttcaagtgcctctcccttgccatgattacgacttatttcaccaagtaccattaaatca |
321 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||| ||||| | | |||||| |||||||||||| || |||||||||| |
|
|
| T |
33362347 |
cacaacttgttgatcaccgtaaccctcatgaatggtttcaagtgccttccccttatgacgtttacgatttatttcaccaattatcattaaatca |
33362254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 116 - 188
Target Start/End: Complemental strand, 2004713 - 2004641
Alignment:
| Q |
116 |
aaagatgatccacatgcaaattggttaatgtcttgcgtggcactttagttaaagtctcacgtggaactccaat |
188 |
Q |
| |
|
||||||||||||||||||||| |||||||||| || ||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
2004713 |
aaagatgatccacatgcaaatccgttaatgtctcgcatggcactgcagttaaagtctcacgtggagctccaat |
2004641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 228 - 321
Target Start/End: Complemental strand, 41441181 - 41441088
Alignment:
| Q |
228 |
cacaacttgttgatcgccgtaaccctcatgaatggtttcaagtgcctctcccttgccatgattacgacttatttcaccaagtaccattaaatca |
321 |
Q |
| |
|
||||||||||||||| | ||||||||| |||||| |||||| |||| ||||||| | | |||||||||||||| |||||||||||||||||| |
|
|
| T |
41441181 |
cacaacttgttgatcacaataaccctcacgaatggcttcaagagccttccccttgctacgtttacgacttatttctccaagtaccattaaatca |
41441088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 321
Target Start/End: Complemental strand, 41431095 - 41431025
Alignment:
| Q |
251 |
cctcatgaatggtttcaagtgcctctcccttgccatgattacgacttatttcaccaagtaccattaaatca |
321 |
Q |
| |
|
|||||||||||| |||||||| || ||||| | | ||||||||||||||||||| ||||||||||||| |
|
|
| T |
41431095 |
cctcatgaatggcttcaagtgtcttcccctttttacgtttacgacttatttcaccaattaccattaaatca |
41431025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 321
Target Start/End: Original strand, 13828 - 13898
Alignment:
| Q |
251 |
cctcatgaatggtttcaagtgcctctcccttgccatgattacgacttatttcaccaagtaccattaaatca |
321 |
Q |
| |
|
|||||||||||| |||||||| || ||||| | | ||||||||||||||||||| ||||||||||||| |
|
|
| T |
13828 |
cctcatgaatggcttcaagtgtcttcccctttttacgtttacgacttatttcaccaattaccattaaatca |
13898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University