View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11746_high_3 (Length: 932)
Name: NF11746_high_3
Description: NF11746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11746_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 728; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 728; E-Value: 0
Query Start/End: Original strand, 19 - 750
Target Start/End: Original strand, 33763108 - 33763839
Alignment:
| Q |
19 |
caaactcctccatcaaatcacctctagatcgataaggctccggactcttcccggagccatcatcggaaactgcatcttcccaaacggaatcatctgcggc |
118 |
Q |
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| T |
33763108 |
caaactcctccatcaaatcacctctagatcgataaggctccggactcttcccggagccatcatcggaaactgcatcttcccaaacggaatcatccgcggc |
33763207 |
T |
|
| Q |
119 |
ttccggcttcacccaaccgataaactccttcccgtaaaccttaaccttattctcttccgtcggtgataaaccgtaaacattctcaaacgtgcagttttga |
218 |
Q |
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| T |
33763208 |
ttccggcttcacccaaccgataaactccttcccgtaaaccttaaccttattctcttccgtcggtgataaaccgtaaacattctcaaacgtgcagttttga |
33763307 |
T |
|
| Q |
219 |
aactcagtgacgaatttccggtaggattcatcggtggggaatttaagagcccagacaccgttggagacgaaatctacacggcgttgatcaccaaacatct |
318 |
Q |
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| T |
33763308 |
aactcagtgacgaatttccggtaggattcatcggtggggaatttaagagcccagacaccgttggagacgaaatctacacggcgttgatcaccaaacatct |
33763407 |
T |
|
| Q |
319 |
ttaattgaagttcggtggaaaccctagcgcggatttttgaaccgactttgagaatccattgaccttgagcaacatcgttttgttcgtcttcttcctcgtc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33763408 |
ttaattgaagttcggtggaaaccctagcgcggatttttgaaccgactttgagaatccattgaccttgagcaacatcgttttgttcgtcttcttcctcgtc |
33763507 |
T |
|
| Q |
419 |
ttcgtagtttttgacgaaggcgtaggaggttcgtttgtcggagagaatccatttagcgttgggagtgttgccgccgatgtgaaggtaaagcttgacagcg |
518 |
Q |
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| T |
33763508 |
ttcgtagtttttgacgaaggcgtaggaggttcgtttgtcggagagaatccatttagcgttgggagtgttgccgccgatgtgaaggtaaagcttgacagcg |
33763607 |
T |
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| Q |
519 |
tttttgggaagtggtgtttttgtctctgattgcgattttgaaggtgaagagtatttgagttttaaggcactgagtttagcgtcgacatcgtcgaggtttg |
618 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33763608 |
tttttgggaagtggtgtttttgtctctgattgcgattttgaaggtgaagagtatttgagttttaaggcactgagtttagcgtcgacatcgtcgaggtttg |
33763707 |
T |
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| Q |
619 |
tggaatgtgattgggatgaagattgagcgtcttggtattgatcttgatcttcttcttgttctggttcttgttcgtcgtaatcggagtcggaatcggagaa |
718 |
Q |
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| T |
33763708 |
tggaatgtgattgggatgaagattgagcgtcttggtattgatcttgatcttcttcttgttctggttcttgttcgtcgtaatcggagtcggaatcggagaa |
33763807 |
T |
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| Q |
719 |
ttcacggccttcgcgggactgagaagtaccca |
750 |
Q |
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| T |
33763808 |
ttcacggccttcgcgggactgagaagtaccca |
33763839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 841 - 907
Target Start/End: Original strand, 33763930 - 33763996
Alignment:
| Q |
841 |
ggaaatgaagaatcagttaacggttttatagcgttaatgtcggttattactttactcgcctcacacg |
907 |
Q |
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| T |
33763930 |
ggaaatgaagaatcagttaacggttttatagcgttaatgtcggttattactttactcgcctcacacg |
33763996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 552 - 648
Target Start/End: Complemental strand, 10231667 - 10231571
Alignment:
| Q |
552 |
gattttgaaggtgaagagtatttgagttttaaggcactgagtttagcgtcgacatcgtcgaggtttgtggaatgtgattgggatgaagattgagcgt |
648 |
Q |
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| T |
10231667 |
gattttgaaggcggaaagtatttaagttttaagacactacgtttagcatatacatcgtcgaggttggtagattgagattgggaggaagattcagcgt |
10231571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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