View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11746_high_44 (Length: 265)
Name: NF11746_high_44
Description: NF11746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11746_high_44 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 19 - 257
Target Start/End: Original strand, 27386320 - 27386558
Alignment:
| Q |
19 |
tcctctaaggctgatggatagtaacatttaccgaaggaataacatcgatgatataaaaacaactcttgaataggtaagctagattcgtcgcaaaaaataa |
118 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
27386320 |
tcctctaaggcttatggatagtaacatttaccgaaggaataacatcgatgttataaaaacaactcttgaataggtaagctagattcgtcgcaaaaaacaa |
27386419 |
T |
|
| Q |
119 |
atgtttttccatacttcaccgcatatgcgaaggaacccaagtgcatatgtgaaaattaaagaactaaaatgatcccattatgacataactacctcatgta |
218 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27386420 |
atgtttttccatacttcactgcatatgcgaaggaacccaagtgcatatgtgaaaattaaagaactaaaatgatcccattatgacataactacctcatgta |
27386519 |
T |
|
| Q |
219 |
taataggaagtccatacctgcaatttcctcccctatgct |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
27386520 |
taataggaagtccatacctgcaatttcctcccttatgct |
27386558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University