View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11746_high_57 (Length: 240)
Name: NF11746_high_57
Description: NF11746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11746_high_57 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 174; Significance: 9e-94; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 16 - 240
Target Start/End: Original strand, 6145952 - 6146176
Alignment:
| Q |
16 |
cagatggtaacagaatgcttagatctatcagagctttgatagaaagagttgtgttgggtactaataagcaaaataactccaaatttaaatttgctctaca |
115 |
Q |
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| T |
6145952 |
cagatggtaacaga-tgcttagatctatcagagttttgatataaagagttgtgttgggtaccaataagcaaaataactccaaatttaaatttgctttaca |
6146050 |
T |
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| Q |
116 |
agatattttagaaaatgatacaacatgattggatgagatacttacttcaccaaactcattaaaagagtattacctaagagaacatggaagagatgataag |
215 |
Q |
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| T |
6146051 |
agatattttagaaaatgatacaacatgattagatgagatacctgcttcaccaaacttattaaaagagtattacccaagagaacatggaagagatgataag |
6146150 |
T |
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| Q |
216 |
agtct-ttccgacctaaccacatatc |
240 |
Q |
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| T |
6146151 |
agtctcttccgacctaaccacatatc |
6146176 |
T |
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Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 85 - 172
Target Start/End: Original strand, 6180301 - 6180389
Alignment:
| Q |
85 |
aaaataactccaaatttaaatttgctctacaagatattttagaaaa-tgatacaacatgattggatgagatacttacttcaccaaactc |
172 |
Q |
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|||||||||||||||||||||||||| || |||| |||||| |||| ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
6180301 |
aaaataactccaaatttaaatttgctttagaagaaattttaaaaaaatgatataacatgattggatgagatacttacttcaccaaactc |
6180389 |
T |
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