View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11746_high_59 (Length: 239)
Name: NF11746_high_59
Description: NF11746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11746_high_59 |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 52112513 - 52112735
Alignment:
| Q |
1 |
cgccatttgatttaacaacagatcgaatctcttctgctaatttacggtgtagattaacaccaccacgtccaatccacttcaacaaattaggnnnnnnnnt |
100 |
Q |
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| T |
52112513 |
cgccatttgatttaacaacagatcgaatctcttctgctaatttacggtgtagattaacaccaccacgtccaatccacttcaacaaattaggaaaaaaaat |
52112612 |
T |
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| Q |
101 |
cttcatcccaccaaatgaattaaaacatgtggcaaataaaagattatgaaccgcttcttctttcgaaactccaagtcgaacagcttcatctaaaaccggt |
200 |
Q |
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| T |
52112613 |
cttcatcccaccaaatgaattaaaacatgtggcaaataaaagattatgaaccgcttcttctttcgaaactccaagtcgaacagcttcatctaaaaccggt |
52112712 |
T |
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| Q |
201 |
ccagttgatgactcatagaaaaa |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
52112713 |
ccagttgatgactcatagaaaaa |
52112735 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 149
Target Start/End: Original strand, 6533302 - 6533350
Alignment:
| Q |
101 |
cttcatcccaccaaatgaattaaaacatgtggcaaataaaagattatga |
149 |
Q |
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||||||||| ||||| |||||||||||||| || ||||| ||||||||| |
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| T |
6533302 |
cttcatcccgccaaacgaattaaaacatgttgcgaataatagattatga |
6533350 |
T |
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