View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11746_high_61 (Length: 236)
Name: NF11746_high_61
Description: NF11746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11746_high_61 |
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Alignment Details
Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 66 - 220
Target Start/End: Original strand, 30870197 - 30870359
Alignment:
| Q |
66 |
aaaaatatataaaaaagttaaatttaatgaatccacatta------gttagttagaaaatgttgatatgtgcagcttgaattttctttacacatttttta |
159 |
Q |
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| T |
30870197 |
aaaaatatataaaaaagttaaatttaatgagtccacattactattagttagttagaaaatgttgatatgtgcagcttgaattttctttacacatttttta |
30870296 |
T |
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| Q |
160 |
aaaagtatttataatacaga--atatatatattgacgtataattatactataatcaagtaatc |
220 |
Q |
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| T |
30870297 |
aaaagtatttataatacagaatatatatatattgacgtataattatactataatcaagtaatc |
30870359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 30869963 - 30870015
Alignment:
| Q |
18 |
agttgagatataaagtctcaacaagggacatccaatataaatttgtataaaaa |
70 |
Q |
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| T |
30869963 |
agttgagatataaagtctcaacaagggacatccaatataaatttgtataaaaa |
30870015 |
T |
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