View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11746_low_1 (Length: 1110)
Name: NF11746_low_1
Description: NF11746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11746_low_1 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 645; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 645; E-Value: 0
Query Start/End: Original strand, 392 - 1093
Target Start/End: Complemental strand, 28933545 - 28932842
Alignment:
| Q |
392 |
gcaaatattgcagcaaccatatttataataaccagtcacttcgtaattctaagaagaagagaaactgacacatactcctgtaatttgtgaataaatctgt |
491 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
28933545 |
gcaaatattgcagcaaccatatttataataaccagtcacttcgtaattctaagaagaagagaaactgagacatactcctgtaatttgtgaataaatctgt |
28933446 |
T |
|
| Q |
492 |
tgtcacttgtgtcataaatttccagcaagtcctctgccatctgccaatttcattagacatgtaaaataccaggccaataaaaggtgattcgaaagttaga |
591 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28933445 |
tgtcacttgtgtcataaatttccagcaagtcctctgccatctgccaatttcattagacatgtaaaataccaggccaataaaaggtgattcgaaagttaga |
28933346 |
T |
|
| Q |
592 |
tgacaaaataaactttttctatccacaatcatgaattagcacacaacaccaatattttttatggggcctgaggaaacctgcagaatacataatatagaac |
691 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28933345 |
tgacaaaataaaaattttctatccacaatcatgaattagcacacaacaccaatattttttatggggcctgaggaaacctgcagaatacataatatagaac |
28933246 |
T |
|
| Q |
692 |
aaaatgcaggtagaaatagaattgttggagtagaataaaaacttcaggagtagaacatacctcatcaaactttttctttacaggatgtcttttcacctaa |
791 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28933245 |
aaaatgcaggtagaaatagaattgttggagtagaataaaaacttcaggagtagaacatacctcatcaaactttttctttacaggatgtcttttcacctaa |
28933146 |
T |
|
| Q |
792 |
atataaaggtagagaagatatc----ttaatggagaaacattataggcaatccaattattatgaaagaaatgtaacatagttaccttatcccggatctca |
887 |
Q |
| |
|
|| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28933145 |
atgt-aaggtagagaagatatcttaattaatggagaaacattataggcaatccaattattatgaaagaaatgtaacatagttaccttatcccggatctca |
28933047 |
T |
|
| Q |
888 |
tcacacatctgactccaaaaagattggtttagagggaataacaacaagatcggtttttgtacttatttcgccgctaggagtggaatgaacacgccgtctc |
987 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
28933046 |
tcacacatctgactccaaaaagatagg-ttagagggaataacaacaagatcggtttttgtacttatttcgccgctaggagtggaacgaacacgccgtctc |
28932948 |
T |
|
| Q |
988 |
ttaggtggatcactacttagttcctcccttagtatgccataacctttcttggttatgtccacaatttttgcatcctttaatttttggaaggaagtagaaa |
1087 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28932947 |
ttaggtggatcactacttagttcctcccttagtatgccataacctttcttggttatgtctacaatttttgcatcctttaatttttggaaggaagtagaaa |
28932848 |
T |
|
| Q |
1088 |
catttg |
1093 |
Q |
| |
|
|||||| |
|
|
| T |
28932847 |
catttg |
28932842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 10 - 346
Target Start/End: Complemental strand, 28933876 - 28933543
Alignment:
| Q |
10 |
gcagcacagacaccaacccaacactaacgaatgtggttacattcaattatttcatattctaaaattattacagtgtcaatgtgtcggtgccatgtctcgt |
109 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28933876 |
gcagcacagacaccaacccaacactgacgaatgtggttacattcaattatttcatattctaaaattattacagtgtcaatgtgtcggtgccatgtctcgt |
28933777 |
T |
|
| Q |
110 |
gtttgtatcagtcccagtgttacatagatctcaatatcatcaattaatattttctttaaaaaataagaaaattggaggatactcaaggatacacaccctt |
209 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28933776 |
gtttgtatcagtcccagtgtta---agatctcaatatcatcaattaatattttctttaaaaaataagaaaattggaggatactcaaggatacacaccctt |
28933680 |
T |
|
| Q |
210 |
ctagaatattcaaatgaatatcagtacaagatacgggtatgaaactgatacttgggcaattttagagtgtcagggcttaatagattagcactataatttg |
309 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28933679 |
ctagaatattcaaatgaatatcggtactagatacgggtatgaaactgatacttaggcaattttagagtgtcagggcttaatagattagcactataatttg |
28933580 |
T |
|
| Q |
310 |
catcagatgttacagatatttagattataactgggca |
346 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28933579 |
catcagatgttacagatatttagattataactgggca |
28933543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 786 - 1088
Target Start/End: Complemental strand, 10187411 - 10187113
Alignment:
| Q |
786 |
acctaaatataaaggtagagaagatatcttaatggagaaacattataggcaatccaattatta------tgaaagaaatgtaacatagttaccttatccc |
879 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| ||||| ||||||| |||||| | |||||| |||||||||||||||||||||| |
|
|
| T |
10187411 |
acctaaatgaaaaggtagagaagatatcttaatggagagacattgtaggcaactcaattacgaaagacttgaaagt--tgtaacatagttaccttatccc |
10187314 |
T |
|
| Q |
880 |
ggatctcatcacacatctgactccaaaaagattggtttagagggaataacaacaagatcggtttttgtacttatttcgccgctaggagtggaatgaacac |
979 |
Q |
| |
|
|| ||||||| | ||| |||||| |||||||||| |||||| |||||||||||||| ||||||||||||||||||||| ||| || ||| || |
|
|
| T |
10187313 |
tgaactcatcaaccttcttactccaccaagattggtt-agagggcataacaacaagatcagtttttgtacttatttcgccg------gtgaaacgaatac |
10187221 |
T |
|
| Q |
980 |
gccgtctcttaggtggatcactacttagttcctcccttagtatgccataacctttcttggttatgtccacaatttttgcatcctttaatttttggaagga |
1079 |
Q |
| |
|
|| |||||||||||| | ||||||||| |||||| |||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
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|
| T |
10187220 |
gctgtctcttaggtgagttactacttagctcctcctttagtatgtcataacctttcttggtcatgtccacaa-ttttgcatcctttaatttttggaagga |
10187122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 530 - 707
Target Start/End: Complemental strand, 10187691 - 10187513
Alignment:
| Q |
530 |
atctgccaatttcattagacatgtaaaataccaggccaataaaaggtgattcgaaagttagatgacaaaataaactttttctatccacaatcatgaatta |
629 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||| |||||||||||||||||| ||| |||| || ||||| |||||| |||| |||| | |||| |||| |
|
|
| T |
10187691 |
atctgccagtttcattaaacatgtaaaataccaagccaataaaaggtgattcagaagatagacga-aaaattaactttctctaaccacgaccatggatta |
10187593 |
T |
|
| Q |
630 |
--gcacacaacaccaatattttttatggggcctgaggaaacctgcagaatacataatatagaacaaaatgcaggtagaaa |
707 |
Q |
| |
|
||||| |||||||| |||||||| ||| || |||| ||| |||||||| | ||||| ||||||||||||||| ||||| |
|
|
| T |
10187592 |
gcgcacagaacaccaacattttttaagggccccgaggcaacatgcagaatgcttaataaagaacaaaatgcaggcagaaa |
10187513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 172; Significance: 7e-92; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 7e-92
Query Start/End: Original strand, 772 - 1093
Target Start/End: Original strand, 35120900 - 35121217
Alignment:
| Q |
772 |
caggatgtcttttcacctaaatataaaggtagagaagatatcttaatggagaaacattataggcaatccaattattatgaaagaaatgtaacatagttac |
871 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||||||||||||||| | ||| ||||||||||||||| | |||| ||||||| ||||| |
|
|
| T |
35120900 |
caggatggcttttcacctaaatgaaaaggtagagaagatatcttaatggagagatattgtaggcaatccaattac---gtaagacttgtaacacggttac |
35120996 |
T |
|
| Q |
872 |
cttatcccggatctcatcacacatctgactccaaaaagattggtttagagggaataacaacaagatcggtttttgtacttatttcgccgctaggagtgga |
971 |
Q |
| |
|
|||||||| |||||||||| || ||| |||||| |||||||||| |||||| |||||||||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
35120997 |
cttatccctgatctcatcaaacttcttactccaccaagattggtt-agagggcataacaacaagatcagtttttgtacttgtttcgccgctaggagtgga |
35121095 |
T |
|
| Q |
972 |
atgaacacgccgtctcttaggtggatcactacttagttcctcccttagtatgccataacctttcttggttatgtccacaatttttgcatcctttaatttt |
1071 |
Q |
| |
|
||||||| || |||||||||||| | | ||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
35121096 |
atgaacaggctgtctcttaggtgtgttgccacttagttcctcctttagtatgtcataacctttcttggtcatgtccacaatttttgcatcctttaatttt |
35121195 |
T |
|
| Q |
1072 |
tggaaggaagtagaaacatttg |
1093 |
Q |
| |
|
||||||||||||||||| |||| |
|
|
| T |
35121196 |
tggaaggaagtagaaacttttg |
35121217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 3e-45
Query Start/End: Original strand, 393 - 754
Target Start/End: Original strand, 35120501 - 35120849
Alignment:
| Q |
393 |
caaatattgcagcaaccatatttataataaccagtcacttcgtaattctaagaagaagagaaactgaca--catactcctgtaatttgtgaataaatctg |
490 |
Q |
| |
|
|||||||| || ||| |||||||| |||||| ||| |||| ||||||||||||| |||||||||||| | |||||||||||| ||||| ||||| | |
|
|
| T |
35120501 |
caaatatttcaccaaacatatttacaataactagtgacttggtaattctaagaacaagagaaactgagagacatactcctgtattttgttaataatgggg |
35120600 |
T |
|
| Q |
491 |
ttgtcacttgtgtcataaatttccagcaagtcctctgccatctgccaatttcattagacatgtaaaataccaggccaataaaaggtgattcgaaagttag |
590 |
Q |
| |
|
||||||||||| ||| | ||| ||||||| ||| ||||||||||||||||||| | ||||||||||||| ||||| |||||||||||| ||||||| |
|
|
| T |
35120601 |
ttgtcacttgtttcaattctatcccgcaagtcatctaccatctgccaatttcattaaaaatgtaaaataccaagccaaaaaaaggtgattcagaagttag |
35120700 |
T |
|
| Q |
591 |
atgacaaaataaactttttctatccacaatcatgaattagcacacaacaccaatattttttatggggcctgaggaaacctgcagaatacataatatagaa |
690 |
Q |
| |
|
|||| |||||| | ||| |||||| ||||| ||||||||| |||||||| |||| ||||| ||| |||| |||||||||||||||| |
|
|
| T |
35120701 |
atga-aaaatatattttctctatc------catga--------ccaacaccaacattttttaaggggtctgagacaacatgca-aatacataatatagaa |
35120784 |
T |
|
| Q |
691 |
caaaatgcaggtagaa-atagaattgttggagtagaataaaaacttcaggagtagaacatacctc |
754 |
Q |
| |
|
||||||||| |||||| | ||||||||| |||||||||||||| |||||||||||| ||||||| |
|
|
| T |
35120785 |
caaaatgcatgtagaagaaagaattgttacagtagaataaaaacatcaggagtagaatatacctc |
35120849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 39828513 - 39828472
Alignment:
| Q |
40 |
atgtggttacattcaattatttcatattctaaaattattaca |
81 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
39828513 |
atgtggttacattcaattatttcatattctcaaattattaca |
39828472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 98
Target Start/End: Original strand, 26462657 - 26462716
Alignment:
| Q |
40 |
atgtggttacattcaattatttcatattctaaaattatta-cagtgtcaatgtgtcggtg |
98 |
Q |
| |
|
||||| ||||||||||||||||||| |||| ||||||||| ||||||| | ||||||||| |
|
|
| T |
26462657 |
atgtgattacattcaattatttcattttcttaaattattatcagtgtcgacgtgtcggtg |
26462716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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