View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11746_low_10 (Length: 560)
Name: NF11746_low_10
Description: NF11746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11746_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 18 - 484
Target Start/End: Complemental strand, 45317278 - 45316812
Alignment:
| Q |
18 |
actgcttggattacacctcaaggaagtgtccattttgtgttaattgtatccgtatgtaccattttctcagattatcatcttcagcaataacaatcatccc |
117 |
Q |
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| T |
45317278 |
actgcttggattacacctcaaggaagtgtccattttgtgttaattgtatccgtatgtaccattttctcagattatcatcttcagcaataacaatcatccc |
45317179 |
T |
|
| Q |
118 |
acgagcaacagctgtttctgaggtatttggcaaaatcaatcttttgcaagtgaatatccctgcagaataattatataagcttgtcaccaacatttccttt |
217 |
Q |
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| T |
45317178 |
acgagcaacagctgtttctgaggtatttggcaaaatcaatcttttgcaagtgaatatccctgcagaataattatataagcttgtcaccaacatttccttt |
45317079 |
T |
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| Q |
218 |
taactctcttgtgtcgagaacaggatggaaaccaaggtgtggctgataccgtcccaacacctatagttataattgatcaagactctgatcctgatgcaac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45317078 |
taactctcttgtgtcgagaacaggatggaaaccaaggtgtggctgataccgtcccaacacctatagttataattgatcaagactctgatcctgatgcaac |
45316979 |
T |
|
| Q |
318 |
tgtcgtcgagattacctttggtgatcgccttggtgctcttcttgacaccgtaagcatttctctcaataaatcaattgaatgcgtattcactgtccaatgt |
417 |
Q |
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| T |
45316978 |
tgtcgtcgagattacctttggtgatcgccttggtgctcttcttgacaccgtaagcatttctctcaataaatcaattgaatgcgtattcactgtccaatgt |
45316879 |
T |
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| Q |
418 |
gtcagtttcagtctatgtcaatgtttcataatatatatcttatatttaaatgccattctgtatcttc |
484 |
Q |
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| T |
45316878 |
gtcagtttcagtctatgtcaatgtttcataatatatatcttatatttaaatgccattctgtatcttc |
45316812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 236 - 365
Target Start/End: Complemental strand, 970106 - 969977
Alignment:
| Q |
236 |
aacaggatggaaaccaaggtgtggctgataccgtcccaacacctatagttataattgatcaagactctgatcctgatgcaactgtcgtcgagattacctt |
335 |
Q |
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||||| ||||||| ||||| | | |||||||||| || || || ||||| |||||||| ||||||| ||||| ||||||||||| || ||||| || || |
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| T |
970106 |
aacagaatggaaatcaaggggagactgataccgttccgaccccaatagtcataattgaccaagacttggatccagatgcaactgtggtggagataacttt |
970007 |
T |
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| Q |
336 |
tggtgatcgccttggtgctcttcttgacac |
365 |
Q |
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| T |
970006 |
cggtgatcggcttggagctcttctcgacac |
969977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 333 - 365
Target Start/End: Complemental strand, 50724115 - 50724083
Alignment:
| Q |
333 |
ctttggtgatcgccttggtgctcttcttgacac |
365 |
Q |
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| T |
50724115 |
ctttggtgatcgccttggagctcttcttgacac |
50724083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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