View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11746_low_11 (Length: 504)
Name: NF11746_low_11
Description: NF11746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11746_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 41875746 - 41875412
Alignment:
| Q |
1 |
tcagtatgcggccatcattagaagaaggtataaatatagcaccgttttctcgtcataatttatttgcaacttcttcccttgaccgtatgttgggctcaga |
100 |
Q |
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| T |
41875746 |
tcagtatgcggccatcattagaagaaggtataaatatagcaccggtttcttgtcgtaatatatacgcaacttcatctcttgaccttatgttggcctcaga |
41875647 |
T |
|
| Q |
101 |
aaacttaaccttgccatcgtacctcttaacattctcaagtttacaaaatgacacatttttcggagtaacaatgtatgcagggattccccttagtttttct |
200 |
Q |
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| T |
41875646 |
aaagttaaccttaccatcatacctcttaacattctcaagtttacaaattggcacattttttggagtaacaacgtatgcagggattccccttagttttgct |
41875547 |
T |
|
| Q |
201 |
gccaaagccaattcagcagcatggtttccactgatttcagagaacaacatcagaagagaaataaattaactgaatcagttttgaaaaaacaacttatgta |
300 |
Q |
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| T |
41875546 |
gccaaagccaatgcagcagcatgatttccactgatttcagagaacaacattagaagag-aataaattaactgaatcagatttgaaaaaataacttatgta |
41875448 |
T |
|
| Q |
301 |
attattgcataaaacaaacctgttgtgtgttgtaac |
336 |
Q |
| |
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| T |
41875447 |
tttattgcataaaacaaacctgctgtgtgttataac |
41875412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 7e-38; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 40868477 - 40868733
Alignment:
| Q |
1 |
tcagtatgcggccatcattagaagaaggtataaatatagcaccgttttctcgtcataatttatttgcaacttcttcccttgaccgtatgttgggctcaga |
100 |
Q |
| |
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|||||||||| ||||||||| ||| | ||||||| |||||||| ||||| | || | |||||| ||| ||| || ||||| || || |||| |||||| |
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| T |
40868477 |
tcagtatgcgcccatcattataaggatgtataaaaatagcaccagtttcttgccacactttattcgcagtttcctctcttgatcgcatattggcctcaga |
40868576 |
T |
|
| Q |
101 |
aaacttaaccttgccatcgtacctcttaacattctcaagtttacaaaatgacacatttttcggagtaacaatgtatgcagggattccccttagtttttct |
200 |
Q |
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| T |
40868577 |
ccagataacctgaccaccataccgcttcacattctcaattttacatgttggcgcatttttaggaataacaatgtatgcagggatcccccgtagttttgct |
40868676 |
T |
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| Q |
201 |
gccaaagccaattcagcagcatggtttccactgatttcagagaacaacatcagaaga |
257 |
Q |
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|||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
40868677 |
gccagagccaatgcagcagcatggtttccactgatttcagagaacaacgtcagaaga |
40868733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 105 - 236
Target Start/End: Original strand, 24818054 - 24818185
Alignment:
| Q |
105 |
ttaaccttgccatcgtacctcttaacattctcaagtttacaaaatgacacatttttcggagtaacaatgtatgcagggattccccttagtttttctgcca |
204 |
Q |
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||||| || |||||||||||||||| ||| |||| ||||||| ||| || |||||||| ||||| |||||||||| ||||||| ||| |||||| |
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| T |
24818054 |
ttaacgtttccatcgtacctcttaatattttcaactttacaagatggtgcacttttcggaaccacaataaatgcagggatcccccttatctttgctgcca |
24818153 |
T |
|
| Q |
205 |
aagccaattcagcagcatggtttccactgatt |
236 |
Q |
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||| ||| ||||||||||||| ||||||||| |
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| T |
24818154 |
aagataatgcagcagcatggttcccactgatt |
24818185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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