View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11746_low_12 (Length: 496)

Name: NF11746_low_12
Description: NF11746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11746_low_12
NF11746_low_12
[»] chr1 (22 HSPs)
chr1 (17-496)||(30367572-30368051)
chr1 (22-434)||(13069660-13070057)
chr1 (86-434)||(13007511-13007844)
chr1 (26-437)||(13161829-13162237)
chr1 (22-434)||(13204770-13205179)
chr1 (29-437)||(13130136-13130541)
chr1 (194-434)||(19727464-19727692)
chr1 (251-434)||(13101311-13101494)
chr1 (26-437)||(13094707-13095115)
chr1 (194-432)||(13214132-13214358)
chr1 (291-488)||(13064951-13065148)
chr1 (334-457)||(13244299-13244422)
chr1 (298-457)||(13271877-13272036)
chr1 (352-436)||(12963707-12963791)
chr1 (334-428)||(19278946-19279040)
chr1 (111-195)||(13067737-13067821)
chr1 (334-438)||(13080643-13080747)
chr1 (352-446)||(13086409-13086503)
chr1 (113-166)||(13086701-13086754)
chr1 (143-181)||(13010802-13010840)
chr1 (86-171)||(13064752-13064837)
chr1 (88-153)||(13080415-13080480)
[»] chr6 (2 HSPs)
chr6 (35-490)||(31396161-31396613)
chr6 (17-88)||(31376155-31376226)


Alignment Details
Target: chr1 (Bit Score: 440; Significance: 0; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 17 - 496
Target Start/End: Original strand, 30367572 - 30368051
Alignment:
Q  17 tttcatatcaaaaatctcttattgtgatagaggaagtgctattctacaggaacttcattcctagtgttttatggaagctgcagaaatggtttcttgttgg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  30367572 tttcatatcaaaaatctcttattgtgatagaggaagtgctattctacaggaacttcattcctagtgtcttatggaagctgcagaaatggtttcttgttgg 30367671  T
Q  117 tcaagaaaagaagtacaaggtagctcaagaaaatcttgaccgattcttgtatgaaagtgtaacatctgccaaatgcgaagagaaaagcaagtgcagcagc 216  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  30367672 tcaagaaaagaagtacaaggtagctgaagaaaatcttgaccgattcttgtatgaaagtgtaacatttgccaaacgcgaagagaaaagcaagtgcagcagc 30367771  T
Q  217 agtgaagaaatggatgaatcttatttcaacttagtaaaagcactgatgaaggaaggttctggaaatgagggagtgagtgagaagtatcttagagacaatg 316  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30367772 agtgaagaaatggatgaatcttatttcaactttgtaaaagcactgatgaaggaaggttctggaaatgagggagtgagtgagaagtatcttagagacaatg 30367871  T
Q  317 cactctctcttttgttagcaggtaatggcacaataagttcaagtctcagttggtttttctggcttgtttcaactcatcctattgtggaagccaaaattat 416  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30367872 cactctctcttttgttagcaggtaatggcacacttagttcaagtctcagttggtttttctggcttgtttcaactcatcctattgtggaagccaaaattat 30367971  T
Q  417 tcaagagatcaaagataattgtgtatcacaacatgagaattggataacttcaatagtggaaaaccttgataagctagtct 496  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  30367972 tcaagagatcaaagataattgtgtatcaaaacatgagaattggataacttcaatggtggaaagccttgataagctagtct 30368051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 22 - 434
Target Start/End: Original strand, 13069660 - 13070057
Alignment:
Q  22 tatcaaaaatctcttattgtgatagaggaagtgctattctacaggaacttcattcctagtgttttatggaagctgcagaaatggtttcttgttggtcaag 121  Q
    |||||||||||||||  ||||||||| || ||| |||| ||| || |||||||||| |||  | | ||||||||||| |||||| | | |||| ||||||    
T  13069660 tatcaaaaatctcttgctgtgatagatgaggtgatattgtaccggcacttcattccaagttatctttggaagctgcaaaaatggctccatgttcgtcaag 13069759  T
Q  122 aaaagaagtacaaggtagctcaagaaaatcttgaccgattcttgtatgaaagtgtaacatctgccaaatgcgaagagaaaagcaagtgcagcagcagtga 221  Q
    |||||||||  | || |||  |||||||||||||||| |||||||||||| || |||||| | |||||    ||||| ||||||||||||||||||||||    
T  13069760 aaaagaagttaagggaagccgaagaaaatcttgaccgtttcttgtatgaaggtataacattttccaaac---aagagcaaagcaagtgcagcagcagtga 13069856  T
Q  222 agaaatggatgaatcttatttcaacttagtaaaagcactgatgaaggaaggttctggaaatgagggagtgagtgagaagtatcttagagacaatgcactc 321  Q
    | |||| |||||            ||| ||||||||||||||||||||||  | |||||    |||| ||  ||||||||||||||||||||||||||||    
T  13069857 ataaattgatga------------ctttgtaaaagcactgatgaaggaagaatatggaacaaggggaatggatgagaagtatcttagagacaatgcactc 13069944  T
Q  322 tctcttttgttagcaggtaatggcacaataagttcaagtctcagttggtttttctggcttgtttcaactcatcctattgtggaagccaaaattattcaag 421  Q
    ||||| || |||||||| ||||||||| | | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13069945 tctctctttttagcaggaaatggcacagttacttcaggtctcagttggtttttctggcttgtttcaactcatcctattgtggaagccaaaattattcaag 13070044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 86 - 434
Target Start/End: Complemental strand, 13007844 - 13007511
Alignment:
Q  86 tatggaagctgcagaaatggtttcttgttggtcaagaaaagaagtacaaggtagctcaagaaaatcttgaccgattcttgtatgaaagtgtaacatctgc 185  Q
    ||||||||||||| |||||| |    ||||||||||||| |||||  |||| |||  || ||||||||||| | ||||||||||||||  |||||| | |    
T  13007844 tatggaagctgcaaaaatggctcgacgttggtcaagaaaggaagttaaaggaagccgaaaaaaatcttgacagtttcttgtatgaaagaataacattttc 13007745  T
Q  186 caaatgcgaagagaaaagcaagtgcagcagcagtgaagaaatggatgaatcttatttcaacttagtaaaagcactgatgaaggaaggttctggaaatgag 285  Q
    ||||    ||||| |||||||||||||||||||||||||||||||||| | |            ||||||||||| |||||||||||  ||||||| | |    
T  13007744 caaac---aagagcaaagcaagtgcagcagcagtgaagaaatggatgatttt------------gtaaaagcacttatgaaggaaggagctggaaacggg 13007660  T
Q  286 ggagtgagtgagaagtatcttagagacaatgcactctctcttttgttagcaggtaatggcacaataagttcaagtctcagttggtttttctggcttgttt 385  Q
    ||| ||   ||||||||||||||||||||||  ||| |||| || |||||||| ||||||||||| |||||| |||||||||||||||||||||||||||    
T  13007659 ggaatggacgagaagtatcttagagacaatgtcctcactctctttttagcaggaaatggcacaattagttcaggtctcagttggtttttctggcttgttt 13007560  T
Q  386 caactcatcctattgtggaagccaaaattattcaagagatcaaagataa 434  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  13007559 caactcatcctattgtggaagccaaaattattcaagaaatcaaagataa 13007511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 26 - 437
Target Start/End: Complemental strand, 13162237 - 13161829
Alignment:
Q  26 aaaaatctcttattgtgatagaggaagtgctattctacaggaacttcattcctagtgttttatggaagctgcagaaatggtttcttgttggtcaagaaaa 125  Q
    |||||||||||  |||||| ||||||||| |||| |||||| |||||||||| |||  |||||||||| |||| |||||| |   |||||||||||| ||    
T  13162237 aaaaatctcttcctgtgatggaggaagtgatattttacaggcacttcattccaagtagtttatggaagttgcaaaaatggctcaatgttggtcaagagaa 13162138  T
Q  126 gaagtacaaggtagctcaagaaaatcttgaccgattcttgtatgaaagtgtaacatctgccaaatgcgaagagaaaagcaagtgcagcagcagtgaagaa 225  Q
    ||||| |||||| || |||||| |||||||||||||||||||||||||| |||||| | ||    | |||||| ||||||| ||||||| |   ||||||    
T  13162137 gaagttcaaggttgcccaagaatatcttgaccgattcttgtatgaaagtataacattttcccttggtgaagagcaaagcaaatgcagcaac---gaagaa 13162041  T
Q  226 atggatgaatcttatttcaacttagtaaaagcactgatgaaggaaggttctggaaatgagggagtgagtgagaagtatcttagagacaatgcactctctc 325  Q
    |||||  ||| || |||   | | |||||||| || | ||| ||||| | |||||| | || | | |||||||||||||||||||| | ||||||| ||     
T  13162040 atggaccaatgttttttaggcatggtaaaagccctaaagaaagaaggatatggaaagggggaaatcagtgagaagtatcttagagatactgcactcacta 13161941  T
Q  326 ttttgttagcaggtaatggcacaataagttcaagtctcagttggtttttctggcttgtttcaactcatcctattgtggaagccaaaattattcaagagat 425  Q
    |  |||| || || |||||  |||| ||||||  |||||||||||||||||||||  |||||||| |||||||||||||||  ||||| |||||||||||    
T  13161940 tggtgtttgccggaaatggttcaattagttcagctctcagttggtttttctggctcctttcaacttatcctattgtggaagaaaaaatcattcaagagat 13161841  T
Q  426 caaagataattg 437  Q
    ||||||||||||    
T  13161840 caaagataattg 13161829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 22 - 434
Target Start/End: Complemental strand, 13205179 - 13204770
Alignment:
Q  22 tatcaaaaatctcttattgtgatagaggaagtgctattctacaggaacttcattcctagtgttttatggaagctgcagaaatggtttcttgttggtcaag 121  Q
    ||||||||| ||||||  |||||||| || ||| || | ||| || |||||||||| ||| || |||||||||| || |||||| | | |||||||||||    
T  13205179 tatcaaaaagctcttacagtgatagatgaggtgataatgtaccggcacttcattccaagttttctatggaagctacaaaaatggctccatgttggtcaag 13205080  T
Q  122 aaaagaagtacaaggtagctcaagaaaatcttgaccgattcttgtatgaaagtgtaacatctgccaaatgcgaagagaaaagcaagtgcagcagcagtga 221  Q
    |||||||||  | || |||  |||||||||||||||||||||| ||||||||| |||||| | |||||    ||||| |||| |||| || | | |||||    
T  13205079 aaaagaagttaagggaagccgaagaaaatcttgaccgattcttatatgaaagtataacattttccaaac---aagagcaaaggaagtacaacggtagtga 13204983  T
Q  222 agaaatggatgaatcttatttcaacttagtaaaagcactgatgaaggaaggttctggaaatgagggagtgagtgagaagtatcttagagacaatgcactc 321  Q
    ||||||||| |||| ||||||   |   | |||||| | || ||||||||| | |||||| || | | |||||| ||||| |||||||||| || |||||    
T  13204982 agaaatggacgaatgttattttgtccgggaaaaagctcggacgaaggaaggatatggaaaggaagaaatgagtgggaagtttcttagagacgatacactc 13204883  T
Q  322 tctcttttgttagcaggtaatggcacaataagttcaagtctcagttggtttttctggcttgtttcaactcatcctattgtggaagccaaaattattcaag 421  Q
    ||||| || |||||||| | |||  ||   |||||| |||| ||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||    
T  13204882 tctctcttcttagcaggaagtggtccagctagttcaggtctaagttggtttttttggcttgtttccactcatcctattgtggaagccaaaataattcaag 13204783  T
Q  422 agatcaaagataa 434  Q
    | |||||||||||    
T  13204782 aaatcaaagataa 13204770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 29 - 437
Target Start/End: Complemental strand, 13130541 - 13130136
Alignment:
Q  29 aatctcttattgtgatagaggaagtgctattctacaggaacttcattcctagtgttttatggaagctgcagaaatggtttcttgttggtcaagaaaagaa 128  Q
    ||||||||  |||||| ||||||||| |||| |||||| |||||||||| |||  |||||||||| |||| |||||| |   |||||||||||| |||||    
T  13130541 aatctcttcctgtgatggaggaagtgatattatacaggcacttcattccaagtagtttatggaagttgcaaaaatggctcaatgttggtcaagagaagaa 13130442  T
Q  129 gtacaaggtagctcaagaaaatcttgaccgattcttgtatgaaagtgtaacatctgccaaatgcgaagagaaaagcaagtgcagcagcagtgaagaaatg 228  Q
    || |||||| || |||||| |||||||||||||||||||||||||| |||||| | || |  | |||||| |||||||||   |||||  ||||||||||    
T  13130441 gttcaaggttgcccaagaatatcttgaccgattcttgtatgaaagtataacattttcccatggtgaagagcaaagcaagt---gcagcgatgaagaaatg 13130345  T
Q  229 gatgaatcttatttcaacttagtaaaagcactgatgaaggaaggttctggaaatgagggagtgagtgagaagtatcttagagacaatgcactctctcttt 328  Q
    ||  ||| || |||   | | |||||||| || | ||| ||||| | |||||| |  | | | |||||||||||||||||||| | |||| |  || | |    
T  13130344 gaccaatgttttttaggcatggtaaaagccctaaagaatgaaggatatggaaagggtgaaatcagtgagaagtatcttagagatactgcatttactatgt 13130245  T
Q  329 tgttagcaggtaatggcacaataagttcaagtctcagttggtttttctggcttgtttcaactcatcctattgtggaagccaaaattattcaagagatcaa 428  Q
    | || || || |||||  |||| ||||||  |||||||||||||||||||||| |||||||| |||||||||||||||  ||||| ||||||||||||||    
T  13130244 tttttgccggaaatggttcaattagttcagctctcagttggtttttctggcttctttcaacttatcctattgtggaagaaaaaatcattcaagagatcaa 13130145  T
Q  429 agataattg 437  Q
    |||||||||    
T  13130144 agataattg 13130136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 194 - 434
Target Start/End: Complemental strand, 19727692 - 19727464
Alignment:
Q  194 aagagaaaagcaagtgcagcagcagtgaagaaatggatgaatcttatttcaacttagtaaaagcactgatgaaggaaggttctggaaatgagggagtgag 293  Q
    ||||| ||||||||||||||||||||||||| |||||||            ||||  |||||||||| ||||||||||| |||||||| | || | |||     
T  19727692 aagagcaaagcaagtgcagcagcagtgaagagatggatg------------acttcctaaaagcactaatgaaggaaggatctggaaagggggaaatgaa 19727605  T
Q  294 tgagaagtatcttagagacaatgcactctctcttttgttagcaggtaatggcacaataagttcaagtctcagttggtttttctggcttgtttcaactcat 393  Q
    ||||||||||||||||||||||  |||| |||| || |||||||| |||||| || | ||| || |||||||||||||||| ||||||||||| ||||||    
T  19727604 tgagaagtatcttagagacaatttactcactctctttttagcaggaaatggcccagttagtacaggtctcagttggtttttttggcttgtttcgactcat 19727505  T
Q  394 cctattgtggaagccaaaattattcaagagatcaaagataa 434  Q
    |||||||| |||||||||||||||||||| |||||||||||    
T  19727504 cctattgtcgaagccaaaattattcaagaaatcaaagataa 19727464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 251 - 434
Target Start/End: Complemental strand, 13101494 - 13101311
Alignment:
Q  251 taaaagcactgatgaaggaaggttctggaaatgagggagtgagtgagaagtatcttagagacaatgcactctctcttttgttagcaggtaatggcacaat 350  Q
    |||||||||| | ||||||||| |||||||| | || | ||  ||||||||||||||||||||||| | || |||| || |||||||| |||||| || |    
T  13101494 taaaagcactaacgaaggaaggatctggaaagggggaaatggatgagaagtatcttagagacaatgtaatcactctctttttagcaggaaatggcccagt 13101395  T
Q  351 aagttcaagtctcagttggtttttctggcttgtttcaactcatcctattgtggaagccaaaattattcaagagatcaaagataa 434  Q
     ||||||  ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||    
T  13101394 tagttcagctctcagttggtttttctggcttgtttccactcatcctattgtggaagccaaaataattcaagaaatcaaagataa 13101311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 26 - 437
Target Start/End: Complemental strand, 13095115 - 13094707
Alignment:
Q  26 aaaaatctcttattgtgatagaggaagtgctattctacaggaacttcattcctagtgttttatggaagctgcagaaatggtttcttgttggtcaagaaaa 125  Q
    |||| ||||||  |||||| ||||||||| | || |||||| |||||||||| |||  |||||||||| |||| |||||| |   |||||||||||| ||    
T  13095115 aaaactctcttcctgtgatggaggaagtgattttttacaggcacttcattccaagtagtttatggaagttgcaaaaatggctcaatgttggtcaagagaa 13095016  T
Q  126 gaagtacaaggtagctcaagaaaatcttgaccgattcttgtatgaaagtgtaacatctgccaaatgcgaagagaaaagcaagtgcagcagcagtgaagaa 225  Q
    ||||| |||||| || |||||| |||||||||||||||||||||||||| |||||| | || |  | |||||| |||| ||||   |||||  |||||||    
T  13095015 gaagttcaaggttgcccaagaatatcttgaccgattcttgtatgaaagtataacattttcccatggtgaagagcaaagtaagt---gcagctatgaagaa 13094919  T
Q  226 atggatgaatcttatttcaacttagtaaaagcactgatgaaggaaggttctggaaatgagggagtgagtgagaagtatcttagagacaatgcactctctc 325  Q
    ||| |  ||| || |||   | | |||||||| || | ||| |||||   |||||| |  | | | |||||||||||||||||||||| |||| |  ||     
T  13094918 atgtaccaatgttttttaggcatggtaaaagccctaaagaatgaaggacatggaaagggagaaatcagtgagaagtatcttagagacactgcatttacta 13094819  T
Q  326 ttttgttagcaggtaatggcacaataagttcaagtctcagttggtttttctggcttgtttcaactcatcctattgtggaagccaaaattattcaagagat 425  Q
    |  | || || || ||||| ||||| ||||||  |||||||||||||||||||||| |||||||| |||||||||||||||  ||||| |||||||||||    
T  13094818 tgatatttgccggaaatggtacaattagttcagctctcagttggtttttctggcttctttcaacttatcctattgtggaagaaaaaatcattcaagagat 13094719  T
Q  426 caaagataattg 437  Q
    || |||||||||    
T  13094718 cagagataattg 13094707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 194 - 432
Target Start/End: Complemental strand, 13214358 - 13214132
Alignment:
Q  194 aagagaaaagcaagtgcagcagcagtgaagaaatggatgaatcttatttcaacttagtaaaagcactgatgaaggaaggttctggaaatgagggagtgag 293  Q
    ||||| ||||||||||||||||||||||||| ||||||||            ||| ||||||||||| ||||||||||| | |||||| | || | ||      
T  13214358 aagagcaaagcaagtgcagcagcagtgaagagatggatga------------cttcgtaaaagcactaatgaaggaaggatttggaaagggggaaatgga 13214271  T
Q  294 tgagaagtatcttagagacaatgcactctctcttttgttagcaggtaatggcacaataagttcaagtctcagttggtttttctggcttgtttcaactcat 393  Q
    ||||||||||||||||||||||||  || |||| || |||||||| |||||| || |  ||||| |||||| ||||||||||||||||||||||||||||    
T  13214270 tgagaagtatcttagagacaatgcgatcactctctttttagcaggaaatggcccagttcgttcaggtctcatttggtttttctggcttgtttcaactcat 13214171  T
Q  394 cctattgtggaagccaaaattattcaagagatcaaagat 432  Q
    | |||||||||||| |||||||||||||| || ||||||    
T  13214170 cttattgtggaagctaaaattattcaagaaataaaagat 13214132  T

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Target: chr1; HSP #11
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 291 - 488
Target Start/End: Original strand, 13064951 - 13065148
Alignment:
Q  291 gagtgagaagtatcttagagacaatgcactctctcttttgttagcaggtaatggcacaataagttcaagtctcagttggtttttctggcttgtttcaact 390  Q
    ||||||||||||||||||||||| |||| ||  ||| |||||||| || || |||||| | |||||| ||||||||||||| || ||||||||||||  |    
T  13064951 gagtgagaagtatcttagagacactgcagtcaatctattgttagcgggaaacggcacagttagttcaggtctcagttggttcttttggcttgtttcatgt 13065050  T
Q  391 catcctattgtggaagccaaaattattcaagagatcaaagataattgtgtatcacaacatgagaattggataacttcaatagtggaaaaccttgataa 488  Q
    |||||| ||||||||||||| |||||||||||||| |||||||||||| ||||  |  |||| || | ||| |||||||| |||||||| ||||||||    
T  13065051 catcctgttgtggaagccaagattattcaagagatgaaagataattgtctatctgatgatgaaaacttgattacttcaattgtggaaaagcttgataa 13065148  T

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Target: chr1; HSP #12
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 334 - 457
Target Start/End: Original strand, 13244299 - 13244422
Alignment:
Q  334 gcaggtaatggcacaataagttcaagtctcagttggtttttctggcttgtttcaactcatcctattgtggaagccaaaattattcaagagatcaaagata 433  Q
    ||||| ||||| ||||| |||||| |||| |||||||| || ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  13244299 gcaggaaatggaacaattagttcaggtctaagttggttcttttggcttgtttcaactcatcctattggggaagcgaaaattattcaagagatcaaagata 13244398  T
Q  434 attgtgtatcacaacatgagaatt 457  Q
    ||||| || ||||| | |||||||    
T  13244399 attgtctaacacaagaggagaatt 13244422  T

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Target: chr1; HSP #13
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 298 - 457
Target Start/End: Complemental strand, 13272036 - 13271877
Alignment:
Q  298 aagtatcttagagacaatgcactctctcttttgttagcaggtaatggcacaataagttcaagtctcagttggtttttctggcttgtttcaactcatccta 397  Q
    |||||| ||||||||| |||| || |||| |||   ||||| ||||| ||| | |||||| |||| |||||||| || ||||||||||||||||||||||    
T  13272036 aagtatattagagacactgcattcactctcttggctgcaggaaatggaacagttagttcaggtctaagttggttcttttggcttgtttcaactcatccta 13271937  T
Q  398 ttgtggaagccaaaattattcaagagatcaaagataattgtgtatcacaacatgagaatt 457  Q
     ||||||||| ||| |||||||||||||||||||| ||||| || ||||| | |||||||    
T  13271936 atgtggaagcaaaacttattcaagagatcaaagatcattgtctaacacaagaggagaatt 13271877  T

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Target: chr1; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 352 - 436
Target Start/End: Original strand, 12963707 - 12963791
Alignment:
Q  352 agttcaagtctcagttggtttttctggcttgtttcaactcatcctattgtggaagccaaaattattcaagagatcaaagataatt 436  Q
    |||||| |||| |||||||| || |||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||    
T  12963707 agttcaggtctaagttggttcttttggcttgtttcaactcatcctattgtggaaactaaaattattcaagagattaaagataatt 12963791  T

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Target: chr1; HSP #15
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 334 - 428
Target Start/End: Original strand, 19278946 - 19279040
Alignment:
Q  334 gcaggtaatggcacaataagttcaagtctcagttggtttttctggcttgtttcaactcatcctattgtggaagccaaaattattcaagagatcaa 428  Q
    ||||||||||| ||||| |||||  |||||| |||||| || ||||| || ||||||||||||||||| ||||| ||||||||||||||||||||    
T  19278946 gcaggtaatggaacaattagttcgggtctcaattggttcttttggctcgtatcaactcatcctattgtcgaagcaaaaattattcaagagatcaa 19279040  T

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Target: chr1; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 111 - 195
Target Start/End: Original strand, 13067737 - 13067821
Alignment:
Q  111 tgttggtcaagaaaagaagtacaaggtagctcaagaaaatcttgaccgattcttgtatgaaagtgtaacatctgccaaatgcgaa 195  Q
    ||||||||| |||||||||| ||||||||| ||||||||| |||| |||||||||||||||||  |||||| | ||||| |||||    
T  13067737 tgttggtcatgaaaagaagttcaaggtagcccaagaaaatattgaacgattcttgtatgaaagcataacattttccaaacgcgaa 13067821  T

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Target: chr1; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 334 - 438
Target Start/End: Original strand, 13080643 - 13080747
Alignment:
Q  334 gcaggtaatggcacaataagttcaagtctcagttggtttttctggcttgtttcaactcatcctattgtggaagccaaaattattcaagagatcaaagata 433  Q
    ||||| ||||| ||||| ||| || |||||| ||||||||| ||||| |||||||| |||||||  || || |  |||||||||||||||||||||||||    
T  13080643 gcaggaaatggaacaattagtacaggtctcacttggtttttttggctggtttcaacgcatcctagggtagatggtaaaattattcaagagatcaaagata 13080742  T
Q  434 attgt 438  Q
    |||||    
T  13080743 attgt 13080747  T

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Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 352 - 446
Target Start/End: Complemental strand, 13086503 - 13086409
Alignment:
Q  352 agttcaagtctcagttggtttttctggcttgtttcaactcatcctattgtggaagccaaaattattcaagagatcaaagataattgtgtatcaca 446  Q
    |||||| |||| |||||||| |  ||||||||||||||||||   || |||||||| ||||| ||||||||||| |||||||||||| |||||||    
T  13086503 agttcaggtctaagttggttctcttggcttgtttcaactcatttcatagtggaagctaaaataattcaagagataaaagataattgtctatcaca 13086409  T

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Target: chr1; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 113 - 166
Target Start/End: Complemental strand, 13086754 - 13086701
Alignment:
Q  113 ttggtcaagaaaagaagtacaaggtagctcaagaaaatcttgaccgattcttgt 166  Q
    |||||||||| |||||||||||||||||||||||||||||| ||| ||||||||    
T  13086754 ttggtcaagagaagaagtacaaggtagctcaagaaaatcttcaccaattcttgt 13086701  T

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Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 143 - 181
Target Start/End: Complemental strand, 13010840 - 13010802
Alignment:
Q  143 aagaaaatcttgaccgattcttgtatgaaagtgtaacat 181  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  13010840 aagaaaatcttgaccgattcttgtatgaaagtataacat 13010802  T

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Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 171
Target Start/End: Original strand, 13064752 - 13064837
Alignment:
Q  86 tatggaagctgcagaaatggtttcttgttggtcaagaaaagaagtacaaggtagctcaagaaaatcttgaccgattcttgtatgaa 171  Q
    |||||||||||||||||||| | |   |||||||||| |||||   ||| ||||||||||||| |||||||  ||||||| |||||    
T  13064752 tatggaagctgcagaaatggctccaaattggtcaagagaagaaactcaaagtagctcaagaaagtcttgacaaattcttgcatgaa 13064837  T

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Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 153
Target Start/End: Original strand, 13080415 - 13080480
Alignment:
Q  88 tggaagctgcagaaatggtttcttgttggtcaagaaaagaagtacaaggtagctcaagaaaatctt 153  Q
    |||||||| || |||||||| |   |||||||||| |||||||||||||||||  |||||||||||    
T  13080415 tggaagctacaaaaatggttacagattggtcaagagaagaagtacaaggtagcaaaagaaaatctt 13080480  T

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Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 35 - 490
Target Start/End: Original strand, 31396161 - 31396613
Alignment:
Q  35 ttattgtgatagaggaagtgctattctacaggaacttcattcctagtgttttatggaagctgcagaaatggtttcttgttggtcaagaaaagaagtacaa 134  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||  ||||||||||||||||||||  |||||| ||||||||||||||| |||| |    
T  31396161 ttattgtgatagaggaagtgatattctataggaacttcattcctagttgtttatggaagctgcagaaataatttcttcttggtcaagaaaagaggtacga 31396260  T
Q  135 ggtagctcaagaaaatcttgaccgattcttgtatgaaagtgtaacatctgcca-aatgcgaagagaaaagcaagtgcagcagcagtgaagaaatggatga 233  Q
    |||||| |||||||||||| |||||||||||||||| ||| |||||| |  |  || || ||||| |||| |||||||| ||||| |||||||| |||||    
T  31396261 ggtagcccaagaaaatcttaaccgattcttgtatgacagtataacatttttcggaacgcaaagagcaaagtaagtgcaggagcagcgaagaaatcgatga 31396360  T
Q  234 atcttatttcaacttagtaaaagcactgatgaaggaaggttctggaaatgagggagtgagtgagaagtatcttagagacaatgcactctctcttttgtta 333  Q
    || ||||    |||| |||| || ||||  ||||||||| ||||||||| | ||||||| ||| |||||||||||||||||||  |||||||||||||||    
T  31396361 atgttat----actttgtaacagtactgc-gaaggaaggatctggaaataatggagtgattgacaagtatcttagagacaatgtgctctctcttttgtta 31396455  T
Q  334 gcaggtaatggcacaataagttcaagtctcagttggtttttctggcttg-tttcaactcatcctattgtggaagccaaaattattcaagagatcaaagat 432  Q
    ||||| ||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||  |||||    
T  31396456 gcaggaaatggcacaattagttcaagtctcggttggtttttctggcttgttttcaactcatcctaatgtggaagccaaaattattcaagagattcaagat 31396555  T
Q  433 aattgtgtatcacaacatgagaattggataacttcaatagtggaaaaccttgataagc 490  Q
    || |||  | | |||||||||||||||||||| ||||   ||||| ||||||||||||    
T  31396556 aactgtcaaacccaacatgagaattggataacatcaacgctggaagaccttgataagc 31396613  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 31376226 - 31376155
Alignment:
Q  17 tttcatatcaaaaatctcttattgtgatagaggaagtgctattctacaggaacttcattcctagtgttttat 88  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||  ||||||||||||||| ||||||    
T  31376226 tttcatatcaaaaatctcttattgtgatagaggaagtgttattctacataaacttcattcctagttttttat 31376155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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