View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11746_low_15 (Length: 468)
Name: NF11746_low_15
Description: NF11746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11746_low_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 457
Target Start/End: Original strand, 29659417 - 29659877
Alignment:
| Q |
1 |
tcataagctgtttccataatctctcccaaacagtcttatatgttataagtatttatgctagtagataaattcaacgcttttaatggataaaatttatagc |
100 |
Q |
| |
|
||||||||||||| |||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29659417 |
tcataagctgttttcataatctctccaaaccagtcttataagttataagtatttatgctagtagataaattcaacgcttttaatggataaaatttatagc |
29659516 |
T |
|
| Q |
101 |
agcaaatcggttagagcaatgtgtcttgtt-gtacttgcagaatttacaaataacaatggtacataattcaa-gtgttggttttgtaagcttc---tatt |
195 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||| |
|
|
| T |
29659517 |
agcaaatcggttag-gcaatgtgtcttgtttgtacttgcagaatttacaaataacaatggtacacaattcaaagtgttggttttgtaagcttcttctatt |
29659615 |
T |
|
| Q |
196 |
gaagtaagtaactgatgtgtagtccccaccttcctaattttttattgtcttgtttctgaggtaggaatggaatgatgacataattgctttaaactaaata |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29659616 |
gaagtaagtaactgatgtgtagtccccaccttcctaattttttattgtcttgtttctgaggtaggaatggaatgatgacataattgctttaaactaaata |
29659715 |
T |
|
| Q |
296 |
ttcctgctatctttggtttcactcaagttagatgccttttgtccacttctccattacatggaaatcataaagtatgatcttcaaagtcacaaggaggctc |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
29659716 |
ttcctgctatctttggtttcactcaagttagatgccttttgtccacttctccattacatggaaatcataaagtatgatctacaaagtcacaaggaggctc |
29659815 |
T |
|
| Q |
396 |
tgcctctgaagtgcaaagtgcttctgctacttttttacttcttaaatatatatatgcttctt |
457 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29659816 |
tgcctctgaaatgcaaagtgcttctgctacttttttacttcttaaatatatatatgcttctt |
29659877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 21043237 - 21043202
Alignment:
| Q |
1 |
tcataagctgtttccataatctctcccaaacagtct |
36 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |
|
|
| T |
21043237 |
tcataagctgtttccataacctctcccaaacagtct |
21043202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 10567125 - 10567160
Alignment:
| Q |
1 |
tcataagctgtttccataatctctcccaaacagtct |
36 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |
|
|
| T |
10567125 |
tcataagctgtttccacaatctctcccaaacagtct |
10567160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 5759574 - 5759542
Alignment:
| Q |
4 |
taagctgtttccataatctctcccaaacagtct |
36 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |
|
|
| T |
5759574 |
taagctgtttccataagctctcccaaacagtct |
5759542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University