View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11746_low_16 (Length: 448)
Name: NF11746_low_16
Description: NF11746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11746_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 405; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 6 - 430
Target Start/End: Complemental strand, 3303137 - 3302713
Alignment:
| Q |
6 |
agcagcagagaaaggaggagaagccagcaggcctaggtgatggcagcaattggtgacagcaggggagggccgaatttgcttgttaccaataattttaact |
105 |
Q |
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| T |
3303137 |
agcaacagaaaaaggaggagaagccagcaggcctaggtgatggcagcaattggtgacagcaggggagggccgaatttgcttgttaccaataattttaact |
3303038 |
T |
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| Q |
106 |
cctaccgagttacacacctcagtcaaatgagatggttaccaaagccttgcgtttgcaattgctttgtgcaaaactctgaatattatgttgaatcaaccga |
205 |
Q |
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| T |
3303037 |
cctaccgagttacacacctcagtcaaatgagatggttaccaaagccttgcgtttgcaattgctttgtgcaaaactctgaatattatgttgaatcaaccga |
3302938 |
T |
|
| Q |
206 |
acaatttctacaaagcctctcctttcatgatagcgtatataaatagcggtcactctttaggggattgatgtaataagattttgatcggtggaagctgcta |
305 |
Q |
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| T |
3302937 |
acaatttctacaaagcctctcctttcatgatagcgtatataaatagcggtcactctttaggggattgatgtaataagattttgatcagtggaagctgcta |
3302838 |
T |
|
| Q |
306 |
cattgaaagtaaatcagaattcttgatatgctttggtttgctttgtgggaggtccctatttggcatttggtttagatagcatacgaagaacaggagcagc |
405 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
3302837 |
cattgaaagtaaatcagagttcttgatatgctttggtttgctttgtgggaggtccctatttggcatttggtttagatagcatatgaagaacaggagcagc |
3302738 |
T |
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| Q |
406 |
atcataatgctttttgtttcaaaga |
430 |
Q |
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| T |
3302737 |
atcataatgctttttgtttcaaaga |
3302713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 80 - 203
Target Start/End: Complemental strand, 3291197 - 3291074
Alignment:
| Q |
80 |
tttgcttgttaccaataattttaactcctaccgagttacacacctcagtcaaatgagatggttaccaaagccttgcgtttgcaattgctttgtgcaaaac |
179 |
Q |
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||||||||| ||||||||||| |||||| |||| | ||||| ||||| ||||||||||||| ||||||||| ||||| | ||||||||||||||| |
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| T |
3291197 |
tttgcttgtcaccaataatttcaactccaaccgcctcacacaactcaggcaaatgagatggtaaccaaagcccagcgttcggctttgctttgtgcaaaat |
3291098 |
T |
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| Q |
180 |
tctgaatattatgttgaatcaacc |
203 |
Q |
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||||||||| |||| ||||||||| |
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| T |
3291097 |
tctgaatataatgtggaatcaacc |
3291074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 320 - 411
Target Start/End: Complemental strand, 3290958 - 3290867
Alignment:
| Q |
320 |
cagaattcttgatatgctttggtttgctttgtgggaggtccctatttggcatttggtttagatagcatacgaagaacaggagcagcatcata |
411 |
Q |
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|||| |||||||||||||||||||| |||| || ||||||| |||||||||| |||||||| | ||| |||| || |||||||||||||| |
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| T |
3290958 |
cagatttcttgatatgctttggtttcttttggggaaggtccccatttggcattcggtttagacggtatatgaaggactggagcagcatcata |
3290867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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