View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11746_low_17 (Length: 444)
Name: NF11746_low_17
Description: NF11746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11746_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 378; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 24 - 441
Target Start/End: Complemental strand, 19583010 - 19582593
Alignment:
| Q |
24 |
caccagccaccatgtctcagcatcaagcatcaccagccgccacgtcgcagctgcaacaaccacctggctctcctttgctatcaccccaatactcttcaac |
123 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19583010 |
caccagccaccatgtcgcagcatcaaccatcaccagccgccacgtcgcagctgcaacaaccacctggctctcctttgctatcaccccaatactcttcaac |
19582911 |
T |
|
| Q |
124 |
acagccacaaccatcacctcaagactctccactaaagcgaaaacatccactacaagatcctcagccatcatcaccaaagcgacatctttcaatccaagaa |
223 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19582910 |
acagccacaaccatcacctgaaaactctccactaaagcgaaaacatccactccaagatcctcagccatcatcaccaaagcgacatctttcaatccaagaa |
19582811 |
T |
|
| Q |
224 |
ccaccgccaggaagttcacagtcacaaggacaaatcatcagcatcaccgccgcatacgtttcatcgagctcatcagatcctctaccggtctcatcagaca |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||| |
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|
| T |
19582810 |
ccaccgccaggaagttcacagtcacaaggacaaatcatcagcatcaccgccgcatacatttcatcgagctcatcagaccctttaccggtctcatcagaca |
19582711 |
T |
|
| Q |
324 |
attcattgaactcctcagacccttcacccgtcgcgtcatcagacccttcacccgtctcatcgggatctccaccggatacattagaatcatcagcaagtaa |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19582710 |
attcattgaactcctcagacccttcacccgtcgcgtcatcagacccttcacccgtctcatcgggatctccaccggatacattagaatcatcagcaagtaa |
19582611 |
T |
|
| Q |
424 |
taatccctatgctactcc |
441 |
Q |
| |
|
|||||||| || |||||| |
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|
| T |
19582610 |
taatccctctgttactcc |
19582593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 24 - 441
Target Start/End: Original strand, 19590575 - 19590992
Alignment:
| Q |
24 |
caccagccaccatgtctcagcatcaagcatcaccagccgccacgtcgcagctgcaacaaccacctggctctcctttgctatcaccccaatactcttcaac |
123 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19590575 |
caccagccaccatgtcgcagcatcaaccatcaccagccgccacgtcgcagctgcaacaaccacctggctctcctttgctatcaccccaatactcttcaac |
19590674 |
T |
|
| Q |
124 |
acagccacaaccatcacctcaagactctccactaaagcgaaaacatccactacaagatcctcagccatcatcaccaaagcgacatctttcaatccaagaa |
223 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19590675 |
acagccacaaccatcacctgaaaactctccactaaagcgaaaacatccactccaagatcctcagccatcatcaccaaagcgacatctttcaatccaagaa |
19590774 |
T |
|
| Q |
224 |
ccaccgccaggaagttcacagtcacaaggacaaatcatcagcatcaccgccgcatacgtttcatcgagctcatcagatcctctaccggtctcatcagaca |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
19590775 |
ccaccgccaggaagttcacagtcacaaggacaaatcatcagcatcaccgccgcatacatttcatcgagctcatcagaccctttaccggtctcatcagaca |
19590874 |
T |
|
| Q |
324 |
attcattgaactcctcagacccttcacccgtcgcgtcatcagacccttcacccgtctcatcgggatctccaccggatacattagaatcatcagcaagtaa |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19590875 |
attcattgaactcctcagacccttcacccgtcgcgtcatcagacccttcacccgtctcatcgggatctccaccggatacattagaatcatcagcaagtaa |
19590974 |
T |
|
| Q |
424 |
taatccctatgctactcc |
441 |
Q |
| |
|
|||||||| || |||||| |
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|
| T |
19590975 |
taatccctctgttactcc |
19590992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 24 - 74
Target Start/End: Original strand, 19590515 - 19590565
Alignment:
| Q |
24 |
caccagccaccatgtctcagcatcaagcatcaccagccgccacgtcgcagc |
74 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||||||||||||||||||| |
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|
| T |
19590515 |
caccagccaccatgtcgcagcatcaaccatcaccagccgccacgtcgcagc |
19590565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 360 - 429
Target Start/End: Original strand, 19586794 - 19586863
Alignment:
| Q |
360 |
catcagacccttcacccgtctcatcgggatctccaccggatacattagaatcatcagcaagtaataatcc |
429 |
Q |
| |
|
||||||| ||||||||||||||||| || |||||||||||| |||||||||| | |||| |||||||| |
|
|
| T |
19586794 |
catcagaaccttcacccgtctcatcaggctctccaccggatttattagaatcaaccgcaacaaataatcc |
19586863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 74
Target Start/End: Complemental strand, 19583053 - 19583020
Alignment:
| Q |
41 |
cagcatcaagcatcaccagccgccacgtcgcagc |
74 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |
|
|
| T |
19583053 |
cagcatcaaccatcaccagccgccacgtcgcagc |
19583020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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