View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11746_low_19 (Length: 423)
Name: NF11746_low_19
Description: NF11746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11746_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 11 - 405
Target Start/End: Original strand, 45316406 - 45316800
Alignment:
| Q |
11 |
gagaagcataggtaccgggtgatacgtgatcatgttatttaaaatcgtcaaacggattgcctctaacaactctggatcttccacttttctacctgtatca |
110 |
Q |
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| T |
45316406 |
gagaagcataggtaccgggtgatacgtgatcatgttatttaaaatcgtcaaacggattgcctctaacaactctggatcttccacttttctacctgtatca |
45316505 |
T |
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| Q |
111 |
ctgcaatcaaagttccacaatgcatctccaaataaattactacacattctaatcataaccttgatccataaaacgaacatgtacaatacacgggaatatt |
210 |
Q |
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| T |
45316506 |
ctgcaatcaaagttccacaatgcatctccaaataaattactacacattctaatcataaccttgatccataaaacgaacatgtacaatacacgggaatatt |
45316605 |
T |
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| Q |
211 |
gcttacgcctttgtgatggaaaacttgttgtgcttgccagaagagtccagacacacgcttgccttaacaacattcagtcccaagtttttcaatgcattca |
310 |
Q |
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| T |
45316606 |
gcttacgcctttgtgatggaaaacttgttgtgcttgccagaagagtccagacacacgcttgccttaacaacattcagtcccaagtttttcaatgcattca |
45316705 |
T |
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| Q |
311 |
tctgcaacacatgtaaagaccattttttgatttaagtttattttcaaccacatctcaatgcttttttaaaataatacagaacgacatactttctt |
405 |
Q |
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| T |
45316706 |
tctgcaacacatgtaaagaccattttttgatttaagtttattttcaaccacatctcaatgcttttttaaaataatacagaacgacatactttctt |
45316800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 23 - 116
Target Start/End: Original strand, 968958 - 969051
Alignment:
| Q |
23 |
taccgggtgatacgtgatcatgttatttaaaatcgtcaaacggattgcctctaacaactctggatcttccacttttctacctgtatcactgcaa |
116 |
Q |
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| T |
968958 |
taccgggtgatactgaatcagattatttataattgtcaaacgaattgcctctaacaactctggatcttccacttttctgccagtatcactgcaa |
969051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 212 - 319
Target Start/End: Original strand, 969792 - 969899
Alignment:
| Q |
212 |
cttacgcctttgtgatggaaaacttgttgtgcttgccagaagagtccagacacacgcttgccttaacaacattcagtcccaagtttttcaatgcattcat |
311 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||| || ||| | || ||||||| || ||||| || || |||| ||| ||||| |||| |
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| T |
969792 |
cttacgcttttgtgatggaaaacttgttgtgcttgccagaagaatcgagaaagacatttgcctttacgacattgaggcctaagtcttttaatgctctcat |
969891 |
T |
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| Q |
312 |
ctgcaaca |
319 |
Q |
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|| ||||| |
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| T |
969892 |
ctacaaca |
969899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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