View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11746_low_2 (Length: 1066)
Name: NF11746_low_2
Description: NF11746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11746_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 995; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 995; E-Value: 0
Query Start/End: Original strand, 14 - 1048
Target Start/End: Original strand, 2794441 - 2795475
Alignment:
| Q |
14 |
agaggttgctggggtattttgatttgaataagtttagtcttgttaagtttctgatgcagaataagttgaagattgtgtggtgtactagcttggccagggc |
113 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2794441 |
agaggttgttggggtattttgatttgaataagtttagtcttgttaagtttctaatgcagaataagttgaagattgtgtggtgtactagcttggccagggc |
2794540 |
T |
|
| Q |
114 |
gagggatcaggaagagagggataaaattgaggaagagatgaaggggtcgaatttggagtcaattttggaggagttatatgttgtgaaagcctctactata |
213 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
2794541 |
gagggatcaagaagagagggataaaattgaggaagagatgaaggggtcgaatttggagtcaattttggaggagttatatgctgtgaaagcctctactata |
2794640 |
T |
|
| Q |
214 |
gagagggagaagaacttggagaagagtataaggtacgaggctcgaaggttgaaagacggggacatggacattgataggggaactggtgatggagttgggg |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2794641 |
gagagggagaagaacttggagaagagtataaggtacgaggctcgaaggttgaaagacggggacatggacattgataggggaactggtgatggagttgggg |
2794740 |
T |
|
| Q |
314 |
aaaatgggggtcaatgccggatacttgatttggataaccttgcttttgaacaaggtggtttgtttatgacaaagggaaaatgtgatcttcctgatgggtc |
413 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2794741 |
aaaatgggggtcaacgccggatgcttgatttggataaccttgcttttgaacaaggtggtttgtttatgacaaagggaaaatgtgatcttcctgatgggtc |
2794840 |
T |
|
| Q |
414 |
ttacaggcttccgagaaaaggttatcaagaaattcatgtgcctgccttgaaggctaaacccattgatcctaatgagaaacttgtgaatattggttatatg |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2794841 |
ttacaggcttccgagaaaaggttatcaagaaattcatgtgcctgccttgaaggctaaacccattgatcctaatgagaaacttgtgaatattggttatatg |
2794940 |
T |
|
| Q |
514 |
ccggattgggcacaaccagccttcaaaggaatgatacaattgaatagagtgcagagcaaggtatacgagactgctctgtttaaatcggataatcttttac |
613 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
2794941 |
ccggattgggcacaaccagccttcaaaggaatgatacaattgaatagagtgcagagcaaggtatatgagactgctctgtttaaatcggataatcttttac |
2795040 |
T |
|
| Q |
614 |
tttgtgctacaactggtgctggaaaaaccaatgttgctgttcttaccatacttcaagagattgcacggcatagaaatcctggtgatggttcaattgacca |
713 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2795041 |
tttgtgctccaactggtgctggaaaaaccaatgttgctgttcttaccatacttcaagagattgcacggcatagaaatcctggtgatggttcaattgacca |
2795140 |
T |
|
| Q |
714 |
tagtgcttataaaattgtttatgttgcgcctatgaaagctcttgtaactgagattgttggcaatttatctaatcgtctgcgtgaatatgatgttaaggtt |
813 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
2795141 |
tagtgcttataaaattgtttatgttgcgcctatgaaagctcttgtaactgagattgttggcaatttatctaatcgtctgcaggaatatgatgttaaggtt |
2795240 |
T |
|
| Q |
814 |
agggagcttagtggagaccagtcactaacacagaaacagatggaagagactcaaattattgtcacaactcctgagaagtgggatattattacacgaaagt |
913 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2795241 |
agggagcttagtggagaccagtcactaacacagaaacagatggaagagactcaaattattgtcacaactcctgagaagtgggatattattacacgaaagt |
2795340 |
T |
|
| Q |
914 |
cgggtgatcgaatttatactcagcttgtgaagcttcttatcattgatgagattcatcttcttcatgataacagagggcctgttcttgaaagtatcattgc |
1013 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2795341 |
cgggtgatcgaatttatactcagcttgtgaagcttcttatcattgatgagattcatcttcttcatgataacagagggcctgttcttgaaagtatcattgc |
2795440 |
T |
|
| Q |
1014 |
tagaacagtcaggcagattgaaacaacgaaggact |
1048 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
2795441 |
tagaacagtcaggcagattgaaacaacgaaggact |
2795475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 337 - 1038
Target Start/End: Original strand, 29262277 - 29262978
Alignment:
| Q |
337 |
cttgatttggataaccttgcttttgaacaaggtggtttgtttatgacaaagggaaaatgtgatcttcctgatgggtcttacaggcttc-cgagaaaaggt |
435 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||| || |||||| ||||| ||||||||| ||||||||||||||||| |||| || ||| ||||||| |
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|
| T |
29262277 |
cttgatttagataacctcacttttgaacaaggtgggttatttatggcaaagaaaaaatgtgaccttcctgatgggtcttataggcatctcga-aaaaggt |
29262375 |
T |
|
| Q |
436 |
tatcaagaaattcatgtgcctgccttgaaggctaaacccattgatcctaatgagaaacttgtgaatattggttatatgccggattgggcacaaccagcct |
535 |
Q |
| |
|
||| |||| |||||||| || || ||||||||||||||| |||||||||||||||| ||| |||| ||| ||||| |||||||||||||| || | |
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|
| T |
29262376 |
tatgaagagattcatgttccagcattgaaggctaaaccccttgatcctaatgagaagcttttgaagatttccgccatgcctgattgggcacaaccggctt |
29262475 |
T |
|
| Q |
536 |
tcaaaggaatgatacaattgaatagagtgcagagcaaggtatacgagactgctctgtttaaatcggataatcttttactttgtgctacaactggtgctgg |
635 |
Q |
| |
|
|||||||||||| ||| ||||||||||| ||||||||||| || || |||||||| || ||| | |||||| | || |||||||| | || |||||||| |
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| T |
29262476 |
tcaaaggaatgacacagttgaatagagttcagagcaaggtttatgaaactgctctcttcaaacctgataatttgttgctttgtgcccctaccggtgctgg |
29262575 |
T |
|
| Q |
636 |
aaaaaccaatgttgctgttcttaccatacttcaagagattgcacggcatagaaatcctggtgatggttcaattgaccatagtgcttataaaattgtttat |
735 |
Q |
| |
|
|||||| ||||||||||||||||| || |||||| ||||||| |||||||| ||| | | ||||||||| |||||||| ||||| ||||||||||| ||| |
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|
| T |
29262576 |
aaaaacgaatgttgctgttcttactatccttcaacagattgcgcggcataggaataccgatgatggttctattgaccacagtgcatataaaattgtatat |
29262675 |
T |
|
| Q |
736 |
gttgcgcctatgaaagctcttgtaactgagattgttggcaatttatctaatcgtctgcgtgaatatgatgttaaggttagggagcttagtggagaccagt |
835 |
Q |
| |
|
||||| || |||||||||||||| | ||| ||||||| ||||| |||||||| ||| || ||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
29262676 |
gttgcaccaatgaaagctcttgtggcggaggttgttgggaatttgtctaatcggttgcaggactataatgttacggttagggagcttagtggagaccagt |
29262775 |
T |
|
| Q |
836 |
cactaacacagaaacagatggaagagactcaaattattgtcacaactcctgagaagtgggatattattacacgaaagtcgggtgatcgaatttatactca |
935 |
Q |
| |
|
||||||| | | ||||| |||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||| ||||||| |||||| || |
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|
| T |
29262776 |
cactaaccaggcagcagatcgaagagactcaaattattgtgacaactcctgagaagtgggatattatcacccgaaagtcgggagatcgaacttatacgca |
29262875 |
T |
|
| Q |
936 |
gcttgtgaagcttcttatcattgatgagattcatcttcttcatgataacagagggcctgttcttgaaagtatcattgctagaacagtcaggcagattgaa |
1035 |
Q |
| |
|
||||||||||||| | ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
29262876 |
gcttgtgaagcttgtcatcattgatgaaattcatctccttcatgataacagagggcctgttcttgaaagtattgttgctagaacagttaggcagattgaa |
29262975 |
T |
|
| Q |
1036 |
aca |
1038 |
Q |
| |
|
||| |
|
|
| T |
29262976 |
aca |
29262978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 511 - 572
Target Start/End: Complemental strand, 29189747 - 29189686
Alignment:
| Q |
511 |
atgccggattgggcacaaccagccttcaaaggaatgatacaattgaatagagtgcagagcaa |
572 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||| || ||||||||||||||||||| |
|
|
| T |
29189747 |
atgcctgattgggcacaaccagctttcaaaggaatgactcacctgaatagagtgcagagcaa |
29189686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 41 - 157
Target Start/End: Original strand, 29261933 - 29262049
Alignment:
| Q |
41 |
ataagtttagtcttgttaagtttctgatgcagaataagttgaagattgtgtggtgtactagcttggccagggcgagggatcaggaagagagggataaaat |
140 |
Q |
| |
|
|||||||||||||| |||||||| || ||| |||| | |||| ||| ||||||||||| | ||||| ||||| |||||||||||||| || | || |
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|
| T |
29261933 |
ataagtttagtcttattaagtttttgttgcgaaataggctgaaaattttgtggtgtactcgtttggcgagggcacaagatcaggaagagagagagacgat |
29262032 |
T |
|
| Q |
141 |
tgaggaagagatgaagg |
157 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
29262033 |
tgaggaagagatgaagg |
29262049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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