View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11746_low_22 (Length: 391)

Name: NF11746_low_22
Description: NF11746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11746_low_22
NF11746_low_22
[»] chr4 (10 HSPs)
chr4 (18-380)||(47292468-47292830)
chr4 (265-381)||(56209616-56209732)
chr4 (271-382)||(54303381-54303492)
chr4 (79-154)||(45862519-45862594)
chr4 (341-381)||(45863436-45863476)
chr4 (341-381)||(45883384-45883424)
chr4 (40-153)||(56209347-56209461)
chr4 (271-304)||(45863240-45863273)
chr4 (271-304)||(45882639-45882672)
chr4 (40-80)||(45862404-45862444)
[»] chr8 (2 HSPs)
chr8 (266-381)||(7973526-7973641)
chr8 (40-193)||(7962518-7962669)
[»] chr5 (1 HSPs)
chr5 (40-120)||(35803176-35803256)


Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 18 - 380
Target Start/End: Complemental strand, 47292830 - 47292468
Alignment:
Q  18 tgtacttgatagacatcatctccatttatgaagttttcaatatcttctcttttctttcttgtagaagaagacaccttatccagccaatttgaataaatat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  47292830 tgtacttgatagacatcatctccatttatgaagttttcaatatcttctcttctctttcttgtagaagaagataccttatccagccaatttgaataaatat 47292731  T
Q  118 tgtcctgcaaagcagtcatcatttcactatgatcttcgatttgttcacctctactacccttttatattcaccaagtgctacaacttctggaattacagaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47292730 tgtcctgcaaagcagtcatcatttcactatgatcttcgatttgttcacctctactacccttttatattcaccaagtgctacaacttctggaattacagaa 47292631  T
Q  218 ttgagaccacctttaaacaaggaaacaggatcagcttcaggagacgtataaacttcttcacatgcacaagcaatgtaatattcttttcctcctattgcag 317  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47292630 ttgagaccacctttaaataaggaaacaggatcagcttcaggagacgtataaacttcttcacatgcacaagcaatgtaatattcttttcctcctattgcag 47292531  T
Q  318 gaacataagcaacaataagttttcctgattttctgaaatttaagatttgccttcgaatttcat 380  Q
    | |||||||||||||||||||||||||||||||||||||| | ||||| | ||||||||||||    
T  47292530 ggacataagcaacaataagttttcctgattttctgaaattcatgatttcctttcgaatttcat 47292468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 265 - 381
Target Start/End: Original strand, 56209616 - 56209732
Alignment:
Q  265 ataaacttcttcacatgcacaagcaatgtaatattcttttcctcctattgcaggaacataagcaacaataagttttcctgattttctgaaatttaagatt 364  Q
    ||||| |||||||||| ||||||||||||||||||||||  |||| |||| || ||||||||| |||| |||||| || |||||||||||||||||||||    
T  56209616 ataaatttcttcacatacacaagcaatgtaatattctttaactccaattgaagtaacataagccacaacaagtttaccagattttctgaaatttaagatt 56209715  T
Q  365 tgccttcgaatttcatc 381  Q
    |||||||||||||||||    
T  56209716 tgccttcgaatttcatc 56209732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 271 - 382
Target Start/End: Complemental strand, 54303492 - 54303381
Alignment:
Q  271 ttcttcacatgcacaagcaatgtaatattcttttcctcctattgcaggaacataagcaacaataagttttcctgattttctgaaatttaagatttgcctt 370  Q
    ||||| |||||||| ||| | |||||| |||||| |||| ||| |||| ||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  54303492 ttctttacatgcactagcgacgtaatactcttttactccaatttcagggacataagcaaagataagttttcctgattttctgaaatttaagatttgcctt 54303393  T
Q  371 cgaatttcatct 382  Q
    ||||||||||||    
T  54303392 cgaatttcatct 54303381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 79 - 154
Target Start/End: Original strand, 45862519 - 45862594
Alignment:
Q  79 tagaagaagacaccttatccagccaatttgaataaatattgtcctgcaaagcagtcatcatttcactatgatcttc 154  Q
    |||||||||| || |||||||||||||||||||| ||||| ||| | || ||||||| ||| |||| |||||||||    
T  45862519 tagaagaagagactttatccagccaatttgaatagatattatccagtaatgcagtcagcatctcacgatgatcttc 45862594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 341 - 381
Target Start/End: Original strand, 45863436 - 45863476
Alignment:
Q  341 cctgattttctgaaatttaagatttgccttcgaatttcatc 381  Q
    ||||||||||||||||| |||||||| ||||||||||||||    
T  45863436 cctgattttctgaaattcaagatttgtcttcgaatttcatc 45863476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 341 - 381
Target Start/End: Original strand, 45883384 - 45883424
Alignment:
Q  341 cctgattttctgaaatttaagatttgccttcgaatttcatc 381  Q
    ||||||||||||||||||||||| || ||||||||||||||    
T  45883384 cctgattttctgaaatttaagatctgtcttcgaatttcatc 45883424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 153
Target Start/End: Original strand, 56209347 - 56209461
Alignment:
Q  40 catttatgaagttttcaatatctt-ctcttttctttcttgtagaagaagacaccttatccagccaatttgaataaatattgtcctgcaaagcagtcatca 138  Q
    |||||||||| || |||||||||| || ||||||||| | | | |||||| || ||||| |||||||||||||| ||||| |||  ||| ||||||| ||    
T  56209347 catttatgaaattgtcaatatctttctattttctttcctcttgcagaagagactttatcgagccaatttgaatagatattatccaacaatgcagtcagca 56209446  T
Q  139 tttcactatgatctt 153  Q
    | |||| ||| ||||    
T  56209447 tctcacgatgttctt 56209461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 304
Target Start/End: Original strand, 45863240 - 45863273
Alignment:
Q  271 ttcttcacatgcacaagcaatgtaatattctttt 304  Q
    ||||||||||||||||||||||||||||| ||||    
T  45863240 ttcttcacatgcacaagcaatgtaatattatttt 45863273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 304
Target Start/End: Original strand, 45882639 - 45882672
Alignment:
Q  271 ttcttcacatgcacaagcaatgtaatattctttt 304  Q
    |||||||||||| |||||||||||||||||||||    
T  45882639 ttcttcacatgcgcaagcaatgtaatattctttt 45882672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 45862404 - 45862444
Alignment:
Q  40 catttatgaagttttcaatatcttctcttttctttcttgta 80  Q
    ||||||||||||| |||| ||||||||||||||||| ||||    
T  45862404 catttatgaagttctcaacatcttctcttttctttcctgta 45862444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 266 - 381
Target Start/End: Original strand, 7973526 - 7973641
Alignment:
Q  266 taaacttcttcacatgcacaagcaatgtaatattcttttcctcctattgcaggaacataagcaacaataagttttcctgattttctgaaatttaagattt 365  Q
    ||||||||||||||||||||| | ||||||||||||||||| || ||| |||  |||||||||||||||||||| ||||||||||||||||||| |||||    
T  7973526 taaacttcttcacatgcacaacctatgtaatattcttttccacccattacagcgacataagcaacaataagtttacctgattttctgaaatttatgattt 7973625  T
Q  366 gccttcgaatttcatc 381  Q
     |||| ||||||||||    
T  7973626 ccctttgaatttcatc 7973641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 40 - 193
Target Start/End: Original strand, 7962518 - 7962669
Alignment:
Q  40 catttatgaagttttcaatatcttctcttttctttcttgtagaagaagacaccttatccagccaatttgaataaatattgtcctgcaaagcagtcatcat 139  Q
    |||||||||| ||||||||||||||| |||||||||   |||||||||| ||||||||||||||||||||||||||| |||||||||| |||||| || |    
T  7962518 catttatgaaattttcaatatcttcttttttctttccaatagaagaagagaccttatccagccaatttgaataaatactgtcctgcaatgcagtcgtcgt 7962617  T
Q  140 ttcactatgatcttcgatttgttcacctctactacccttttatattcaccaagt 193  Q
     |||| || ||||| |||||||| |||||  |||||| | |||||| |||||||    
T  7962618 ctcacgataatctttgatttgttgacctc--ctacccatctatatttaccaagt 7962669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 40 - 120
Target Start/End: Original strand, 35803176 - 35803256
Alignment:
Q  40 catttatgaagttttcaatatcttctcttttctttcttgtagaagaagacaccttatccagccaatttgaataaatattgt 120  Q
    ||||||||||||||| ||  |||||||||||||| | | |||||||||| || |||||||||||||||||||| |||||||    
T  35803176 catttatgaagttttgaacttcttctcttttcttccctctagaagaagagactttatccagccaatttgaatagatattgt 35803256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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