View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11746_low_23 (Length: 385)
Name: NF11746_low_23
Description: NF11746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11746_low_23 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 17 - 385
Target Start/End: Original strand, 33975592 - 33975979
Alignment:
| Q |
17 |
aattggtttctagttcattgaatgcaatggggttttgtctttaatactacttgttttcattttatttcactattttcattatcttgatgttagt------ |
110 |
Q |
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| T |
33975592 |
aattggtttctagttcattgaatgcaatggggttttgtctttaatactacttgttttcattttatttcactattttcattatcttgatgttagtactaag |
33975691 |
T |
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| Q |
111 |
------cttttaagcatctcattaattaagataagattggatggcctatatttcacgattgaattttattatatttattaaacataagttgatcttgcaa |
204 |
Q |
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| T |
33975692 |
tcatgtcttttaaatatctcattaattaagataagattggatgacccatatttcacgattgaattttattatatttattaaacataagttgatcttgaaa |
33975791 |
T |
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| Q |
205 |
tctggatcgtcaaatcttaattggacggccgcatatctttatacttcatgcatatccaagaaaatgacatgttaggattgagacttgttcaattttgttt |
304 |
Q |
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| T |
33975792 |
tctggattgtcaaatcttaattggacggccgcatatctttatacttcatgcatatccaagaaaatgacatgttaggattgagacttgttcaatttttatt |
33975891 |
T |
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| Q |
305 |
ttt-------aaattactattattttctctcaaattaacgcttacgttgttcatgtttgttcctaacattgttcaaaggttttattgg |
385 |
Q |
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| T |
33975892 |
ttttttttaaaaattactattattttctctcaaattaacgcttacgttgttcatgtttgttcctaacattgttcaaaggttttattgg |
33975979 |
T |
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