View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11746_low_32 (Length: 334)
Name: NF11746_low_32
Description: NF11746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11746_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 3 - 310
Target Start/End: Complemental strand, 52111156 - 52110850
Alignment:
| Q |
3 |
actggctattcagaatcaatttaatattcaaaacctgcacccctaacttcgagttcacctccccggcaagtaccagatcgtattcaaagtcagactcgcc |
102 |
Q |
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| T |
52111156 |
actggctattcagaatcaatttaatattcaaaacctgcacccctaacttcgagttcacctccctggcaagtaccagatcgtattcaaagtcagactcgcc |
52111057 |
T |
|
| Q |
103 |
agcatgatcagttcttaaacaattagatagagagattttggagagatgatgaagatgaattattttgcatcggcctaaagcaagggcaggccttggatga |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
52111056 |
agcatgatcagttcttaaacaattagatagagagattttggagagaggatgaagatgaattattttgaatcggcctaaagcaagggcaggccttggatga |
52110957 |
T |
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| Q |
203 |
tatatatcgaatttnnnnnnnnnnnnnnnnnnngttaaatgagatagagaagagataatgaagatcggttgtgtgacactgatgaggggtgtaaactggt |
302 |
Q |
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|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
52110956 |
tatatatcgaattt-aaaaaactaaaaaaaaaagttaaatgagacagagaagagataatgaagatcggttgtgtgacactgatgagggatgtaaactggt |
52110858 |
T |
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| Q |
303 |
gtagtgta |
310 |
Q |
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|||||||| |
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| T |
52110857 |
gtagtgta |
52110850 |
T |
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