View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11746_low_34 (Length: 331)
Name: NF11746_low_34
Description: NF11746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11746_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 15394110 - 15394420
Alignment:
| Q |
1 |
tgggatttgcaacagaaattcgaccagccaatggatgcagaagcaggaaggctcaaaaatatgtacagagaaaaagtatgatgcaatgaattctattttg |
100 |
Q |
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| T |
15394110 |
tgggatttgcaacagaaatttgaccagccaatggatgcagaagcaggaaggctcaaaaatatgtacagagaaaaagtatgatgcaatgaattctattttg |
15394209 |
T |
|
| Q |
101 |
tttacataggatactgcaatttgcaacgttgaaattttgatgtctacaacatgtcttttaagtgattttaagtaatttttcgatctatgttattttgatt |
200 |
Q |
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| T |
15394210 |
tttacataggatactgcaatttgcaactttgaaattttgatgtctacaacatgtcttttaagtgattttaagtaatttttcgatctatgttaatttgatt |
15394309 |
T |
|
| Q |
201 |
tgtttcagaagttttctgtgctgttgcttctacgactggcatatcaaagtcttggtgtcgtttatggagatctgggaacttcacccttatacgttttcta |
300 |
Q |
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|||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15394310 |
tgtttcagaagttttctgcgctgttgcttctacaactggcatatcaaagtcttggtgtcgtttatggagatctgggaacttcacccttatacgttttcta |
15394409 |
T |
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| Q |
301 |
taacacatttc |
311 |
Q |
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||||||||||| |
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| T |
15394410 |
taacacatttc |
15394420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 15385675 - 15385986
Alignment:
| Q |
1 |
tgggatttgcaacagaaattcgaccagccaatggatgcagaagcaggaaggctcaaaaatatgtacagagaaaaagtatgatgcaatgaattctattttg |
100 |
Q |
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||||||||| |||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15385675 |
tgggatttggaacagaaacttgaccagccaatggatgcagaagcaggaaggctcagaaatatgtacagagaaaaagtatgatgcaatgaattctattttg |
15385774 |
T |
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| Q |
101 |
tttacataggatactgcaatttgcaacgttgaaattttgatgtctacaacatgtcttttaagtgattttaagtaa-tttttcgatctatgttattttgat |
199 |
Q |
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||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||| |
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| T |
15385775 |
tttacataggaaactgcaatttgcaactttgaaattttgatgtctacgacatgtctgttaagtgattttaagtaattttttcgatctatgttattttgat |
15385874 |
T |
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| Q |
200 |
ttgtttcagaagttttctgtgctgttgcttctacgactggcatatcaaagtcttggtgtcgtttatggagatctgggaacttcacccttatacgttttct |
299 |
Q |
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||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||| |||||| |||||||||| |||||||| ||||||| |
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| T |
15385875 |
ttgtttcagaagttttctgcgctgttgcttctacgactagcatatcaaagtcttggtgtagtttacggagatttgggaacttcgcccttatatgttttct |
15385974 |
T |
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| Q |
300 |
ataacacatttc |
311 |
Q |
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| T |
15385975 |
ataacacatttc |
15385986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 204 - 300
Target Start/End: Complemental strand, 38669414 - 38669318
Alignment:
| Q |
204 |
ttcagaagttttctgtgctgttgcttctacgactggcatatcaaagtcttggtgtcgtttatggagatctgggaacttcacccttatacgttttcta |
300 |
Q |
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||||||| ||||||| ||||| |||| || || |||||||| |||||||| || |||||||||||| |||| ||||||||||| || |||||||| |
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| T |
38669414 |
ttcagaaattttctgcattgttgattctgcggcttgcatatcagagtcttggcgtggtttatggagatttgggcacttcacccttgtatgttttcta |
38669318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 38669759 - 38669678
Alignment:
| Q |
1 |
tgggatttgcaacagaaattcgaccagccaatggatgcagaagcaggaaggctcaaaaatatgtacagagaaaaagtatgat |
82 |
Q |
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||||||||| | ||||| | |||||||| ||||| | ||| |||||||| |||| ||||||||||||||||||||||||| |
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| T |
38669759 |
tgggatttggatcagaagcttgaccagcctatggaggaagaggcaggaagactcaggaatatgtacagagaaaaagtatgat |
38669678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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