View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11746_low_35 (Length: 331)
Name: NF11746_low_35
Description: NF11746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11746_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 4 - 323
Target Start/End: Original strand, 50550077 - 50550395
Alignment:
| Q |
4 |
tcaatgtaacccaagtgctaccccaaattcatagctagaataagcaatcgataattgtagaaatagaaacaaagttgtcatcattggtttaataaaataa |
103 |
Q |
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| T |
50550077 |
tcaatgtcacccaagtggtaccc-aaattcatagctagaataagcaatcgataattttagaaatagaaacaaagttgtcatcattggtttaataaaataa |
50550175 |
T |
|
| Q |
104 |
aatgaattagtggtgattaaactataccaacatctagattgagtagtgttgtagtattaatcgatggggcaattggatatcagttaagtgggtgcgtaat |
203 |
Q |
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| T |
50550176 |
aatgaattagtggtgattaaactataccaacatctagattgagtagtgttgtagtattaatcgatggggcaattggatatcagttaagtgggtgcgtaat |
50550275 |
T |
|
| Q |
204 |
ttcattataaatgatttttacgctgacgtcgagttgaattgaagctcagtactatcttgccatttcatattgtgattattattggctgcttgtacaagat |
303 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
50550276 |
ttcattataaattatttttacgctgacgtcgagttgaattgaagctcactactatcttgccatttcatattgtgattattattggctgcttgtaaaagat |
50550375 |
T |
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| Q |
304 |
attatcaaagatcctttgct |
323 |
Q |
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|||||||||||||||||||| |
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| T |
50550376 |
attatcaaagatcctttgct |
50550395 |
T |
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