View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11746_low_36 (Length: 329)
Name: NF11746_low_36
Description: NF11746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11746_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 14 - 310
Target Start/End: Original strand, 49271669 - 49271965
Alignment:
| Q |
14 |
aggagcacagagaacaccaggaacagagggacagaacttaaagctatatatctcataagcatgttcacctgcaagcctctcaattttgaacttgctaaca |
113 |
Q |
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| T |
49271669 |
aggagcacaaagaacaccaggaacagagggacagaacttaaagctatatatctcataagcatgttcacctgcaagcctctcaatcttgaacttgctaaca |
49271768 |
T |
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| Q |
114 |
agatccccagctgtaccaccagtgctcacaaaccaaaacccagacccaacctttaaaagcctccacacttttggttcattgcaaggactacccagaatag |
213 |
Q |
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| T |
49271769 |
agatccccagctgcaccaccagtgctcacaaaccaaaacccagacccaacctttaaaagcctccacacttttggttcattgcaaggactacccagaatag |
49271868 |
T |
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| Q |
214 |
gaatctcaatggtgaggtcagtgagagttggaatgtaatcaagacctgatgcagagaaatacaccggtgtgccgattgcatcagggttacggattac |
310 |
Q |
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| T |
49271869 |
gaatctcaatggtgaggtcagtgagagttggaatgtaatcaagacctgatgcagagaaatacaccggtgtgccgattgcatcagggttacggattac |
49271965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 14 - 254
Target Start/End: Original strand, 49277586 - 49277832
Alignment:
| Q |
14 |
aggagcacagagaacaccaggaacagagggacagaacttaaagctatatatctcataagcatgttcacctgcaagcctctcaattttgaacttgctaaca |
113 |
Q |
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| T |
49277586 |
aggagcacaaagagtaccaggaacagaaggacagtacagaaagctataaatctcataagcatgttctccctcaagcctctcaatcttaaactggctaaaa |
49277685 |
T |
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| Q |
114 |
agatccccagctgtaccaccagtgctcacaaaccaaaac------ccagacccaacctttaaaagcctccacacttttggttcattgcaaggactaccca |
207 |
Q |
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| T |
49277686 |
aggttcccaggaaaaccaccggtgctcacaaaccaaaacctagctctagttccctcttttgaaatcttccacacttttctctcactgcaaggactaccca |
49277785 |
T |
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| Q |
208 |
gaataggaatctcaatggtgaggtcagtgagagttggaatgtaatca |
254 |
Q |
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| T |
49277786 |
atattggaatctcaacggtgagatcagtgagagttggaatgtaatca |
49277832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 85 - 186
Target Start/End: Original strand, 49269292 - 49269393
Alignment:
| Q |
85 |
caagcctctcaattttgaacttgctaacaagatccccagctgtaccaccagtgctcacaaaccaaaacccagacccaacctttaaaagcctccacacttt |
184 |
Q |
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| T |
49269292 |
caagcttctcaatcttgaacttactaacaacatccccagctacaccaccagtgctcaaaaaccagaacccagatccctcttttgaaagcttcaacacttt |
49269391 |
T |
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| Q |
185 |
tg |
186 |
Q |
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|| |
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| T |
49269392 |
tg |
49269393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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