View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11746_low_37 (Length: 318)
Name: NF11746_low_37
Description: NF11746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11746_low_37 |
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Alignment Details
Target: chr8 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 20 - 303
Target Start/End: Complemental strand, 4244505 - 4244222
Alignment:
| Q |
20 |
ttaagttcacctcactcttttaccattgatcaagaaactctcatagatattgtcaaagagaaaagcattgatacacttcagaaacatggtggagttgaag |
119 |
Q |
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| T |
4244505 |
ttaagttcacctcactcttttaccattgatcaagaaactctcatagatattgtcaaagagaaaagcattgatacacttcagaaacatggtggagttgaag |
4244406 |
T |
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| Q |
120 |
gtgttgcttcatcacttaaaaccaacgttgagtttggtatcaaaagtcatgatgatgattttcatgacatttcaattagacaacaagtgtttggttccaa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4244405 |
gtgttgcttcatcacttaaaaccaacgttgagtttggtatcagaagtcatgatgatgattttcatgacatttcaattagacaacaagtgtttggttccaa |
4244306 |
T |
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| Q |
220 |
cacttacaaaaaaccaccttctaaaagtttctttcattttgttgttgaagcttttaaggatgtaacaattcttattcttttggt |
303 |
Q |
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| T |
4244305 |
cacttacaaaaaaccaccttctaaaagtttctttcattttgttgttgaagcttttaaggatgtaacaattcttattcttttggt |
4244222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 32 - 303
Target Start/End: Complemental strand, 6187552 - 6187278
Alignment:
| Q |
32 |
cactcttttaccattgatcaagaaactctcatagatattgtcaaagagaaaagcattgatacacttcagaaacatggtggagttgaaggtgttgcttcat |
131 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||| |
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| T |
6187552 |
cactcttttaccattgatcaagaaactctcatagatattgtcaaagagaaaaacattgatacacttcaaaatcatggtggagttgaaggtgttgcttcat |
6187453 |
T |
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| Q |
132 |
cacttaaaaccaacgttgagtttggtatcaaaagtcatga---tgatgattttcatgacatttcaattagacaacaagtgtttggttccaacacttacaa |
228 |
Q |
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|||||||||||||| |||||||||||||||||||| |||| | |||||||| | || ||| ||||||| |||||||||||||||||||||||||||| |
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| T |
6187452 |
cacttaaaaccaacattgagtttggtatcaaaagtgatgatactaatgattttgaagatattgcaattaggaaacaagtgtttggttccaacacttacaa |
6187353 |
T |
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| Q |
229 |
aaaaccaccttctaaaagtttctttcattttgttgttgaagcttttaaggatgtaacaattcttattcttttggt |
303 |
Q |
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||||||||||||||| |||||| ||||||||||| ||||||||||||||||||| |||||||| || |||||||| |
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| T |
6187352 |
aaaaccaccttctaagagtttcattcattttgttattgaagcttttaaggatgttacaattctaatccttttggt |
6187278 |
T |
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