View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11746_low_38 (Length: 312)
Name: NF11746_low_38
Description: NF11746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11746_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 11 - 307
Target Start/End: Original strand, 52111943 - 52112239
Alignment:
| Q |
11 |
cataggctgcgggatgcatcatgcatatacatgcaattaaacaattaataattaatccagaaaatgtattatgaagtaaaacaaaactacaaaactaaaa |
110 |
Q |
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| T |
52111943 |
cataagctgcgggatgcatcatgcatatacatgcaattaaacaattaataattaatccagaaaatgtattatgaagtaaaacaaaactacaaaactaaaa |
52112042 |
T |
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| Q |
111 |
tttagctttcttgagagaggtaaaggtaacagcagatcctataggagattttccaacttgaataccaaaagtatcataacgaagaaacagttccaccacc |
210 |
Q |
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| T |
52112043 |
tttagctttcttgagagaggtaaaggtaacagcagatcctataggagattttccaacttgaataccaaaagtatcataacgaagaaacagttccaccacc |
52112142 |
T |
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| Q |
211 |
aaaagtctagaaaacaacacaacaaaatcctttccaggacattgcttattaccagccgtaggttgttctgtttcacgaccattagaccaaaacacat |
307 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52112143 |
aaaagtctagaaaacaacacaacaaaatcctttccgggacattgcttattaccagccgtaggttgttctgtttcacgaccattagaccaaaacacat |
52112239 |
T |
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