View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11746_low_39 (Length: 303)

Name: NF11746_low_39
Description: NF11746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11746_low_39
NF11746_low_39
[»] chr8 (1 HSPs)
chr8 (1-287)||(4611805-4612102)


Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 4611805 - 4612102
Alignment:
Q  1 caaaattgcgtgaaatgtgatagcatcaagttgcaacgaatccaacgataatgacactataagatatttacatatgttcctttcccttgtcttttatcat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4611805 caaaattgcgtgaaatgtgatagcatcaagttgcaacgaatccaacgattatgacactataagatatttacatatgttcctttcccttgtcttttatcat 4611904  T
Q  101 gctagtaaccaatatttataccctaaaatcagtaccaaagattctttgttatatacaatataaatttctaattcccaaaaagatttaagaatatttttca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4611905 gctagtaaccaatatttataccctaaaatcagtaccaaagattctttgatatatacaatataaatttctaattcccaaaaagatttaagaatatttttca 4612004  T
Q  201 -tttttataagtaacgatgtttttgc----------aaaaacatctttagggatttcataataaataacaaatacattatagtatcaattttactttt 287  Q
     |||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4612005 ttttttataagtaacgatgtttttgcaaaaacatgtaaaaacatctttagggatttcataataaataacaaatacattatagtatcaattttactttt 4612102  T

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