View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11746_low_42 (Length: 280)
Name: NF11746_low_42
Description: NF11746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11746_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 49336238 - 49335975
Alignment:
| Q |
1 |
ccaccttttatatacccacttaacagagaattccaagaaacaacatttttgtcaggcatttcatcaaacaccttacgtgcagtcaccacatcgccaattt |
100 |
Q |
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| T |
49336238 |
ccaccttttatatacccacttaacagagaattccaagaaacaacatttttgtcaggcatttcatcaaacaccttacgtgcagtcaccacatcaccaattt |
49336139 |
T |
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| Q |
101 |
tacagtacaaatcaagcagcgccgtttgtacataaacacaagcatcaaatccaaatttatgaacatgcccatgaatcaataaaccacacaaatcatcctc |
200 |
Q |
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| T |
49336138 |
tacagtacaaatcaagcagcgccgtttgtacataaacacaagcatcaaatccaaatttatgaacatgcccatgaatcaataaaccacacaaatcatcctc |
49336039 |
T |
|
| Q |
201 |
aacccgagcacatgacttgagaatagaggatacagcatgtgaacttggacacaacccaatcctc |
264 |
Q |
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| T |
49336038 |
aacccgagcacatgacttgagaatagaggatacagcatgtgaacttggacacaacccaatcctc |
49335975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 82
Target Start/End: Complemental strand, 1481728 - 1481686
Alignment:
| Q |
40 |
acaacatttttgtcaggcatttcatcaaacaccttacgtgcag |
82 |
Q |
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| T |
1481728 |
acaacatttctgtcaggcatttcatcgaacaccttacgtgcag |
1481686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 82
Target Start/End: Original strand, 24700869 - 24700920
Alignment:
| Q |
31 |
ttccaagaaacaacatttttgtcaggcatttcatcaaacaccttacgtgcag |
82 |
Q |
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| T |
24700869 |
ttccaagaaacaacacttctttccggcatttcatcaaacaccttccgtgcag |
24700920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 42761202 - 42761157
Alignment:
| Q |
32 |
tccaagaaacaacatttttgtcaggcatttcatcaaacaccttacg |
77 |
Q |
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| T |
42761202 |
tccaagaaaccacatttctgtcagacaattcatcaaacaccttacg |
42761157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 45164834 - 45164786
Alignment:
| Q |
22 |
aacagagaattccaagaaacaacatttttgtcaggcatttcatcaaaca |
70 |
Q |
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|||| |||||||||||||||||||| ||| ||||||||| |||||||| |
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| T |
45164834 |
aacaaagaattccaagaaacaacatctttctcaggcattaaatcaaaca |
45164786 |
T |
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