View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11746_low_44 (Length: 275)

Name: NF11746_low_44
Description: NF11746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11746_low_44
NF11746_low_44
[»] chr8 (5 HSPs)
chr8 (14-259)||(18130398-18130635)
chr8 (45-99)||(4673443-4673497)
chr8 (45-99)||(44067503-44067557)
chr8 (53-110)||(13845229-13845286)
chr8 (45-110)||(14692447-14692511)
[»] chr4 (5 HSPs)
chr4 (42-109)||(20743286-20743353)
chr4 (36-114)||(34515877-34515955)
chr4 (40-99)||(32910533-32910592)
chr4 (39-97)||(7012047-7012105)
chr4 (52-114)||(31243551-31243613)
[»] chr5 (4 HSPs)
chr5 (39-99)||(24906319-24906379)
chr5 (42-99)||(7997184-7997241)
chr5 (49-99)||(34276863-34276913)
chr5 (53-110)||(39696006-39696063)
[»] chr6 (7 HSPs)
chr6 (39-110)||(6389724-6389795)
chr6 (44-99)||(19602199-19602254)
chr6 (65-124)||(34895028-34895086)
chr6 (45-99)||(17168481-17168535)
chr6 (45-110)||(34446552-34446617)
chr6 (73-109)||(4420187-4420223)
chr6 (39-99)||(12696305-12696365)
[»] scaffold0007 (1 HSPs)
scaffold0007 (39-84)||(225301-225346)
[»] chr2 (9 HSPs)
chr2 (53-110)||(25544476-25544533)
chr2 (58-110)||(23354659-23354711)
chr2 (58-114)||(23354998-23355054)
chr2 (44-99)||(37497106-37497161)
chr2 (45-99)||(37986766-37986820)
chr2 (39-99)||(15972854-15972914)
chr2 (39-99)||(21782836-21782896)
chr2 (39-99)||(23718007-23718067)
chr2 (39-99)||(24105679-24105739)
[»] chr7 (3 HSPs)
chr7 (39-99)||(43249974-43250034)
chr7 (53-108)||(7133287-7133342)
chr7 (49-109)||(23930210-23930270)
[»] chr3 (11 HSPs)
chr3 (39-99)||(24205059-24205119)
chr3 (39-99)||(26492223-26492283)
chr3 (39-98)||(4466619-4466678)
chr3 (56-99)||(16789668-16789711)
chr3 (39-98)||(25652050-25652109)
chr3 (45-99)||(21479105-21479159)
chr3 (45-98)||(14223872-14223925)
chr3 (43-99)||(4987309-4987365)
chr3 (39-99)||(8383238-8383298)
chr3 (39-99)||(10954933-10954993)
chr3 (39-99)||(15796312-15796372)
[»] chr1 (4 HSPs)
chr1 (36-98)||(2896140-2896202)
chr1 (50-100)||(42325552-42325602)
chr1 (53-114)||(40747776-40747837)
chr1 (39-99)||(38503301-38503361)
[»] scaffold0049 (1 HSPs)
scaffold0049 (36-125)||(56900-56988)
[»] scaffold0103 (1 HSPs)
scaffold0103 (39-99)||(51792-51852)


Alignment Details
Target: chr8 (Bit Score: 167; Significance: 2e-89; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 14 - 259
Target Start/End: Complemental strand, 18130635 - 18130398
Alignment:
Q  14 agaacaccttagagtattgtgtacaacacgaacactgacacaccgacacagataataagttgagaaaatgatacaattcagtgtaaccagaggtgtcatg 113  Q
    ||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||       
T  18130635 agaacaccttagactattgtgtagaacacgaacaatgacacaccgacacagataataagttgagaaaatgatacaattaagtgtaaccagaggtgtc--- 18130539  T
Q  114 tgtcatgtcggtacagtatcagacaccgacgcgtgtccgtgcttcactgtctctgactgatagtgtgcatannnnnnnctaggtgagattttgaaatcta 213  Q
        |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||    
T  18130538 ----atgttggtacagtatcagacaccgacacgtgtccgtgcttcactgtctctgactgatagtgtgcat-tttttttctaggtgagattttgaaatcta 18130444  T
Q  214 ccatagtttgagtttgagacacatcacacatgtatagtgtgcatat 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  18130443 ccatagtttgagtttgagacacatcacacatgtatagtgtgcatat 18130398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 99
Target Start/End: Complemental strand, 4673497 - 4673443
Alignment:
Q  45 acactgacacaccgacacagataataagttgagaaaatgatacaattcagtgtaa 99  Q
    |||||||||| |||||||||||||||| |||| ||||| ||| ||||||||||||    
T  4673497 acactgacacgccgacacagataataatttgaaaaaatcataaaattcagtgtaa 4673443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 99
Target Start/End: Original strand, 44067503 - 44067557
Alignment:
Q  45 acactgacacaccgacacagataataagttgagaaaatgatacaattcagtgtaa 99  Q
    |||||||||| ||||||| |||||||| |||||||||||| | ||| ||||||||    
T  44067503 acactgacacgccgacacggataataatttgagaaaatgacataatacagtgtaa 44067557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 53 - 110
Target Start/End: Original strand, 13845229 - 13845286
Alignment:
Q  53 acaccgacacagataataagttgagaaaatgatacaattcagtgtaaccagaggtgtc 110  Q
    ||||||||||| ||||||| |||||||||||||| |||| || |||| || |||||||    
T  13845229 acaccgacacaaataataatttgagaaaatgatataatttagagtaatcataggtgtc 13845286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 110
Target Start/End: Original strand, 14692447 - 14692511
Alignment:
Q  45 acactgacacaccgacacagataataagttgagaaaatgatacaattcagtgtaaccagaggtgtc 110  Q
    |||||||||| | |||||||||||||| ||||| |||||| | ||||||||||||| | |||||||    
T  14692447 acactgacactctgacacagataataatttgag-aaatgacataattcagtgtaactataggtgtc 14692511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 42 - 109
Target Start/End: Complemental strand, 20743353 - 20743286
Alignment:
Q  42 cgaacactgacacaccgacacagataataagttgagaaaatgatacaattcagtgtaaccagaggtgt 109  Q
    ||||||||||||| ||||||| |||||||| |||||||||||| | |||||||||||| || ||||||    
T  20743353 cgaacactgacacgccgacacggataataatttgagaaaatgacataattcagtgtaatcataggtgt 20743286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 36 - 114
Target Start/End: Complemental strand, 34515955 - 34515877
Alignment:
Q  36 acaacacgaacactgacacaccgacacagataataagttgagaaaatgatacaattcagtgtaaccagaggtgtcatgt 114  Q
    |||||||||||||||||||  |||||| |||||||| |  ||||||||| | |||||||||||| || |||||||||||    
T  34515955 acaacacgaacactgacacgtcgacacggataataattcaagaaaatgacataattcagtgtaaacataggtgtcatgt 34515877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 99
Target Start/End: Original strand, 32910533 - 32910592
Alignment:
Q  40 cacgaacactgacacaccgacacagataataagttgagaaaatgatacaattcagtgtaa 99  Q
    ||||||||| |||| |||||||| |||||||| |||||||||||| | ||||||||||||    
T  32910533 cacgaacaccgacataccgacacggataataatttgagaaaatgacataattcagtgtaa 32910592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 7012047 - 7012105
Alignment:
Q  39 acacgaacactgacacaccgacacagataataagttgagaaaatgatacaattcagtgt 97  Q
    ||||| |||| ||||| ||||||| |||||||| |||||||||||| | ||||||||||    
T  7012047 acacggacaccgacacgccgacaccgataataatttgagaaaatgacataattcagtgt 7012105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 114
Target Start/End: Complemental strand, 31243613 - 31243551
Alignment:
Q  52 cacaccgacacagataataagttgagaaaatgatacaattcagtgtaaccagaggtgtcatgt 114  Q
    |||| ||||||  ||||||| |||||||||||| | |||||||||||| || |||||||||||    
T  31243613 cacatcgacacttataataatttgagaaaatgacataattcagtgtaatcataggtgtcatgt 31243551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 24906379 - 24906319
Alignment:
Q  39 acacgaacactgacacaccgacacagataataagttgagaaaatgatacaattcagtgtaa 99  Q
    |||||||||||||||| || ||||||||||||| |||| ||||||| | ||||||||||||    
T  24906379 acacgaacactgacacgccaacacagataataatttgaaaaaatgacataattcagtgtaa 24906319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 99
Target Start/End: Complemental strand, 7997241 - 7997184
Alignment:
Q  42 cgaacactgacacaccgacacagataataagttgagaaaatgatacaattcagtgtaa 99  Q
    ||||||||||||| || |||| |||||||| |||||||||||||| ||| ||||||||    
T  7997241 cgaacactgacacgccaacacggataataatttgagaaaatgatataatacagtgtaa 7997184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 99
Target Start/End: Original strand, 34276863 - 34276913
Alignment:
Q  49 tgacacaccgacacagataataagttgagaaaatgatacaattcagtgtaa 99  Q
    |||||||||||||||| |||||| || ||||||| ||| ||||||||||||    
T  34276863 tgacacaccgacacagttaataatttaagaaaatcataaaattcagtgtaa 34276913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 53 - 110
Target Start/End: Complemental strand, 39696063 - 39696006
Alignment:
Q  53 acaccgacacagataataagttgagaaaatgatacaattcagtgtaaccagaggtgtc 110  Q
    |||||||||| || ||||| |||||||||||||| |||| ||||||| || |||||||    
T  39696063 acaccgacaccgacaataatttgagaaaatgatataatttagtgtaatcataggtgtc 39696006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 110
Target Start/End: Original strand, 6389724 - 6389795
Alignment:
Q  39 acacgaacactgacacaccgacacagataataagttgagaaaatgatacaattcagtgtaaccagaggtgtc 110  Q
    ||||| ||||| |||| ||||||| |||||||| |||||||||||||| |||| ||||||| || |||||||    
T  6389724 acacggacactcacacgccgacacggataataatttgagaaaatgatataatttagtgtaatcataggtgtc 6389795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 99
Target Start/End: Complemental strand, 19602254 - 19602199
Alignment:
Q  44 aacactgacacaccgacacagataataagttgagaaaatgatacaattcagtgtaa 99  Q
    ||||| |||||||| |||| |||||||| |||||||||||||| ||||||||||||    
T  19602254 aacacggacacaccaacactgataataatttgagaaaatgatataattcagtgtaa 19602199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 124
Target Start/End: Complemental strand, 34895086 - 34895028
Alignment:
Q  65 ataataagttgagaaaatgatacaattcagtgtaaccagaggtgtcatgtgtcatgtcgg 124  Q
    ||||||| |||||||||| |||||||||||||||| || |||||||| ||||||||||||    
T  34895086 ataataatttgagaaaattatacaattcagtgtaatcataggtgtca-gtgtcatgtcgg 34895028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 99
Target Start/End: Complemental strand, 17168535 - 17168481
Alignment:
Q  45 acactgacacaccgacacagataataagttgagaaaatgatacaattcagtgtaa 99  Q
    |||||||||| || |||| |||||||| |||||||||||||| |||| |||||||    
T  17168535 acactgacacgccaacactgataataatttgagaaaatgatataatttagtgtaa 17168481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 110
Target Start/End: Original strand, 34446552 - 34446617
Alignment:
Q  45 acactgacacaccgacacagataataagttgagaaaatgatacaattcagtgtaaccagaggtgtc 110  Q
    |||| ||||| | ||||| |||||||| |||||||||||| | |||||||||||| || |||||||    
T  34446552 acacagacactctgacacggataataatttgagaaaatgacataattcagtgtaatcataggtgtc 34446617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 109
Target Start/End: Complemental strand, 4420223 - 4420187
Alignment:
Q  73 ttgagaaaatgatacaattcagtgtaaccagaggtgt 109  Q
    |||||||||||||| ||||||||||||||| ||||||    
T  4420223 ttgagaaaatgatataattcagtgtaaccataggtgt 4420187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 12696305 - 12696365
Alignment:
Q  39 acacgaacactgacacaccgacacagataataagttgagaaaatgatacaattcagtgtaa 99  Q
    ||||| |||||||||| ||||||||| |||||| |||| ||||| | | ||||||||||||    
T  12696305 acacggacactgacacgccgacacagctaataatttgaaaaaattacataattcagtgtaa 12696365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 225346 - 225301
Alignment:
Q  39 acacgaacactgacacaccgacacagataataagttgagaaaatga 84  Q
    ||||| |||||||||| |||||||||||||||| ||||||||||||    
T  225346 acacggacactgacacgccgacacagataataatttgagaaaatga 225301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 110
Target Start/End: Original strand, 25544476 - 25544533
Alignment:
Q  53 acaccgacacagataataagttgagaaaatgatacaattcagtgtaaccagaggtgtc 110  Q
    ||||||||||  ||||||| |||||||||||||| |||||||||||| || |||||||    
T  25544476 acaccgacacgtataataatttgagaaaatgatataattcagtgtaatcataggtgtc 25544533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 110
Target Start/End: Complemental strand, 23354711 - 23354659
Alignment:
Q  58 gacacagataataagttgagaaaatgatacaattcagtgtaaccagaggtgtc 110  Q
    |||||||||||||| |||||||||||||| |||| ||||||| || |||||||    
T  23354711 gacacagataataatttgagaaaatgatataatttagtgtaatcataggtgtc 23354659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 23355054 - 23354998
Alignment:
Q  58 gacacagataataagttgagaaaatgatacaattcagtgtaaccagaggtgtcatgt 114  Q
    |||||||||||||| |||||||||||||| |||| |||| || || |||||||||||    
T  23355054 gacacagataataatttgagaaaatgatataatttagtgcaatcataggtgtcatgt 23354998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 44 - 99
Target Start/End: Original strand, 37497106 - 37497161
Alignment:
Q  44 aacactgacacaccgacacagataataagttgagaaaatgatacaattcagtgtaa 99  Q
    |||||||||||| |||||| |||||||| |||||||||||  |||||||| |||||    
T  37497106 aacactgacacatcgacactgataataatttgagaaaatgccacaattcaatgtaa 37497161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 99
Target Start/End: Original strand, 37986766 - 37986820
Alignment:
Q  45 acactgacacaccgacacagataataagttgagaaaatgatacaattcagtgtaa 99  Q
    |||||||||| |||||||||||||||| |||| ||||||||| | || |||||||    
T  37986766 acactgacacgccgacacagataataatttgaaaaaatgatatatttgagtgtaa 37986820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 15972854 - 15972914
Alignment:
Q  39 acacgaacactgacacaccgacacagataataagttgagaaaatgatacaattcagtgtaa 99  Q
    ||||| |||||||||| ||||||||  |||||| |||| ||||| | ||||||||||||||    
T  15972854 acacggacactgacacgccgacacaattaataatttgaaaaaattacacaattcagtgtaa 15972914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 21782896 - 21782836
Alignment:
Q  39 acacgaacactgacacaccgacacagataataagttgagaaaatgatacaattcagtgtaa 99  Q
    |||| ||||||||||| ||||||| | |||||| |||||||||| | | ||||||||||||    
T  21782896 acacaaacactgacacgccgacactgctaataatttgagaaaatcacataattcagtgtaa 21782836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 23718007 - 23718067
Alignment:
Q  39 acacgaacactgacacaccgacacagataataagttgagaaaatgatacaattcagtgtaa 99  Q
    ||||| |||||||||||||||||| | |||||| |||||||| | | | ||||||||||||    
T  23718007 acacggacactgacacaccgacaccgctaataatttgagaaagtcacataattcagtgtaa 23718067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 24105679 - 24105739
Alignment:
Q  39 acacgaacactgacacaccgacacagataataagttgagaaaatgatacaattcagtgtaa 99  Q
    ||||| |||||||||||||||||| | |||||| |||||||| | | | ||||||||||||    
T  24105679 acacggacactgacacaccgacaccgctaataatttgagaaagtcacataattcagtgtaa 24105739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 43249974 - 43250034
Alignment:
Q  39 acacgaacactgacacaccgacacagataataagttgagaaaatgatacaattcagtgtaa 99  Q
    ||||| |||||||||| ||||||| |||||||| |||||||||||| | ||| ||||||||    
T  43249974 acacggacactgacacgccgacacggataataatttgagaaaatgacataatacagtgtaa 43250034  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 108
Target Start/End: Complemental strand, 7133342 - 7133287
Alignment:
Q  53 acaccgacacagataataagttgagaaaatgatacaattcagtgtaaccagaggtg 108  Q
    |||||||||||||| |||| |||||||||||| | |||||||||||| || |||||    
T  7133342 acaccgacacagatgataatttgagaaaatgacataattcagtgtaatcataggtg 7133287  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 109
Target Start/End: Original strand, 23930210 - 23930270
Alignment:
Q  49 tgacacaccgacacagataataagttgagaaaatgatacaattcagtgtaaccagaggtgt 109  Q
    ||||||| |||||| |||| ||| |||||||||||| | |||||||||||| || ||||||    
T  23930210 tgacacatcgacacggatagtaatttgagaaaatgacataattcagtgtaatcataggtgt 23930270  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 24205119 - 24205059
Alignment:
Q  39 acacgaacactgacacaccgacacagataataagttgagaaaatgatacaattcagtgtaa 99  Q
    ||||| |||||||||| ||||||| |||||||| |||||||||||| | ||| ||||||||    
T  24205119 acacggacactgacacgccgacacggataataatttgagaaaatgacataatacagtgtaa 24205059  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 26492283 - 26492223
Alignment:
Q  39 acacgaacactgacacaccgacacagataataagttgagaaaatgatacaattcagtgtaa 99  Q
    ||||| |||||||||| |||||| || |||||| |||| ||||| ||||||||||||||||    
T  26492283 acacggacactgacacgccgacagagctaataatttgaaaaaatcatacaattcagtgtaa 26492223  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 4466678 - 4466619
Alignment:
Q  39 acacgaacactgacacaccgacacagataataagttgagaaaatgatacaattcagtgta 98  Q
    |||||||||||||||| ||||||| | |||||| || ||||||| ||| |||||||||||    
T  4466678 acacgaacactgacactccgacaccggtaataatttaagaaaatcatataattcagtgta 4466619  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 56 - 99
Target Start/End: Complemental strand, 16789711 - 16789668
Alignment:
Q  56 ccgacacagataataagttgagaaaatgatacaattcagtgtaa 99  Q
    |||||||||||||||| |||||||||||| | ||||||||||||    
T  16789711 ccgacacagataataatttgagaaaatgacataattcagtgtaa 16789668  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 25652109 - 25652050
Alignment:
Q  39 acacgaacactgacacaccgacacagataataagttgagaaaatgatacaattcagtgta 98  Q
    ||||| ||||| |||| || |||| |||||||| |||||||||||||| |||||||||||    
T  25652109 acacggacactaacacgccaacacggataataatttgagaaaatgatataattcagtgta 25652050  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 99
Target Start/End: Original strand, 21479105 - 21479159
Alignment:
Q  45 acactgacacaccgacacagataataagttgagaaaatgatacaattcagtgtaa 99  Q
    |||||||||| ||||||||| |||||| |||| ||||| | ||||||||||||||    
T  21479105 acactgacacgccgacacagctaataatttgaaaaaatcacacaattcagtgtaa 21479159  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 98
Target Start/End: Complemental strand, 14223925 - 14223872
Alignment:
Q  45 acactgacacaccgacacagataataagttgagaaaatgatacaattcagtgta 98  Q
    |||| ||||| |||||||||||||||| ||||||||| |||| |||| ||||||    
T  14223925 acaccgacacgccgacacagataataatttgagaaaacgatataatttagtgta 14223872  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 99
Target Start/End: Complemental strand, 4987365 - 4987309
Alignment:
Q  43 gaacactgacacaccgacacagataataagttgagaaaatgatacaattcagtgtaa 99  Q
    |||||||||||| ||||||||| |||||| |||| ||||| | | ||||||||||||    
T  4987365 gaacactgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaa 4987309  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 8383238 - 8383298
Alignment:
Q  39 acacgaacactgacacaccgacacagataataagttgagaaaatgatacaattcagtgtaa 99  Q
    ||||| ||| |||||| ||||||| | |||||| |||||||||| ||| ||||||||||||    
T  8383238 acacggacattgacacgccgacaccgctaataatttgagaaaatcatataattcagtgtaa 8383298  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 10954933 - 10954993
Alignment:
Q  39 acacgaacactgacacaccgacacagataataagttgagaaaatgatacaattcagtgtaa 99  Q
    |||||||||||||||| ||||||||  |||||| |||| ||||| | | ||||||||||||    
T  10954933 acacgaacactgacacgccgacacaactaataatttgaaaaaatcacataattcagtgtaa 10954993  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 15796372 - 15796312
Alignment:
Q  39 acacgaacactgacacaccgacacagataataagttgagaaaatgatacaattcagtgtaa 99  Q
    ||||| ||| |||||| ||||||||| |||||| |||| ||||| ||| ||||||||||||    
T  15796372 acacggacaatgacacgccgacacagttaataatttgaaaaaatcatataattcagtgtaa 15796312  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 98
Target Start/End: Complemental strand, 2896202 - 2896140
Alignment:
Q  36 acaacacgaacactgacacaccgacacagataataagttgagaaaatgatacaattcagtgta 98  Q
    |||||||| |||||||||| ||||||| | |||||| |||||||||| | | |||||||||||    
T  2896202 acaacacggacactgacacgccgacaccgctaataatttgagaaaatcacataattcagtgta 2896140  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 100
Target Start/End: Original strand, 42325552 - 42325602
Alignment:
Q  50 gacacaccgacacagataataagttgagaaaatgatacaattcagtgtaac 100  Q
    |||||||| |||| |||||||| |||||||||||| | |||||||||||||    
T  42325552 gacacaccaacaccgataataatttgagaaaatgacataattcagtgtaac 42325602  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 53 - 114
Target Start/End: Complemental strand, 40747837 - 40747776
Alignment:
Q  53 acaccgacacagataataagttgagaaaatgatacaattcagtgtaaccagaggtgtcatgt 114  Q
    |||||||||| |||||||| |||||||||||| | |||||| |||||  | |||||||||||    
T  40747837 acaccgacacggataataatttgagaaaatgacataattcaatgtaattataggtgtcatgt 40747776  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 38503301 - 38503361
Alignment:
Q  39 acacgaacactgacacaccgacacagataataagttgagaaaatgatacaattcagtgtaa 99  Q
    ||||| ||||| |||||||||||| | |||||| |||||||||| ||| | ||||||||||    
T  38503301 acacggacactaacacaccgacaccgctaataatttgagaaaatcatatatttcagtgtaa 38503361  T

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Target: scaffold0049 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 125
Target Start/End: Original strand, 56900 - 56988
Alignment:
Q  36 acaacacgaacactgacacaccgacacagataataagttgagaaaatgatacaattcagtgtaaccagaggtgtcatgtgtcatgtcggt 125  Q
    |||||||| ||||||||||   || | |||| |||| |||||||||||||| |||||||||||| || | |||||| ||||| |||||||    
T  56900 acaacacgcacactgacacgttgataaagattataatttgagaaaatgatataattcagtgtaatcataagtgtca-gtgtcgtgtcggt 56988  T

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Target: scaffold0103 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 51792 - 51852
Alignment:
Q  39 acacgaacactgacacaccgacacagataataagttgagaaaatgatacaattcagtgtaa 99  Q
    ||||| |||||||||| ||||||||| |||||| |||| ||||| | | ||||||||||||    
T  51792 acacggacactgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaa 51852  T

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