View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11746_low_45 (Length: 273)
Name: NF11746_low_45
Description: NF11746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11746_low_45 |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 47292490 - 47292305
Alignment:
| Q |
1 |
catgatttcccttcgaatttcatgagtttagcccaaccgcaatttaaacgataaatatgaagacacactgcagaaatacgatgatcatatgcggctttca |
100 |
Q |
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| T |
47292490 |
catgatttcctttcgaatttcatgagtttagcccaaccacaatttaaacgataaatatgaagacacactgcagaaatacgatgatcatatgcggctttca |
47292391 |
T |
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| Q |
101 |
acaaattatcgcaaattcgaggcagagatgatacctcaccatggtgctcaggtatctggccgctcaaatcaatttgcaagacgctg |
186 |
Q |
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| T |
47292390 |
acaaattatcgcaaattcgaggcagagatgatacctcaccatggtgctcagatatctggccgctcaaatcaatttgcaagacgctg |
47292305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 194 - 267
Target Start/End: Complemental strand, 47291991 - 47291918
Alignment:
| Q |
194 |
gtgcagtatcagtcgattagggcttggaaaggaaaagaatagtgtatgagcgttagcttagggtttcttctcac |
267 |
Q |
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| T |
47291991 |
gtgcagtatcagtcgattagggcttggaaaggaaaagaatagtgtatgagcgttagcttagggtttcttctcac |
47291918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 4 - 129
Target Start/End: Original strand, 56209712 - 56209838
Alignment:
| Q |
4 |
gatttcccttcgaatttcat-gagtttagcccaaccgcaatttaaacgataaatatgaagacacactgcagaaatacgatgatcatatgcggctttcaac |
102 |
Q |
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| T |
56209712 |
gatttgccttcgaatttcatcgagtttagcccaaccacaatttaaagtatcaatacgaagatatacggcagaaatacgatgatcataagctgctttcaac |
56209811 |
T |
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| Q |
103 |
aaattatcgcaaattcgaggcagagat |
129 |
Q |
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| T |
56209812 |
atattatcgcaaaattgaggcagagat |
56209838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 117
Target Start/End: Original strand, 45883411 - 45883518
Alignment:
| Q |
11 |
cttcgaatttcat-gagtttagcccaaccgcaatttaaacgataaatatgaagacacactgcagaaatacgatgatcatatgcggctttcaacaaattat |
109 |
Q |
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| T |
45883411 |
cttcgaatttcatcgagtttagcccaaccgcaatttaaattgtcaatttgaagatacacaccagaaatacgaggatcataagctgctttcaacaaattat |
45883510 |
T |
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| Q |
110 |
cgcaaatt |
117 |
Q |
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|||||||| |
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| T |
45883511 |
cgcaaatt |
45883518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 11 - 126
Target Start/End: Original strand, 45863463 - 45863579
Alignment:
| Q |
11 |
cttcgaatttcatgag-tttagcccaaccgcaatttaaacgataaatatgaagacacactgcagaaatacgatgatcatatgcggctttcaacaaattat |
109 |
Q |
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| T |
45863463 |
cttcgaatttcatcagctttagcccaaccacaatttaaattatcaatttgaagatatacggcagaaatacgaggatcataagctgctttcaacaaattat |
45863562 |
T |
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| Q |
110 |
cgcaaattcgaggcaga |
126 |
Q |
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| T |
45863563 |
ctcaaatttggggcaga |
45863579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 202 - 261
Target Start/End: Complemental strand, 47288472 - 47288412
Alignment:
| Q |
202 |
tcagtcgattagggctt-ggaaaggaaaagaatagtgtatgagcgttagcttagggtttct |
261 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||| |||| |
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| T |
47288472 |
tcagtcgattagggctttggaaaggaaaagaatagtgcatgagcgtgagcttagggcttct |
47288412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 2 - 124
Target Start/End: Original strand, 7973619 - 7973742
Alignment:
| Q |
2 |
atgatttcccttcgaatttcat-gagtttagcccaaccgcaatttaaacgataaatatgaagacacactgcagaaatacgatgatcatatgcggctttca |
100 |
Q |
| |
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|||||||||||| ||||||||| ||||||||| |||| ||| |||||| |||||||| || | |||| |||||||||||| ||||||| |||||||||| |
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| T |
7973619 |
atgatttccctttgaatttcatcgagtttagctcaactgcattttaaaggataaataacaacatacacagcagaaatacgaggatcataagcggctttca |
7973718 |
T |
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| Q |
101 |
acaaattatcgcaaattcgaggca |
124 |
Q |
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| T |
7973719 |
acaaattctcgcaaatttgaggca |
7973742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 129
Target Start/End: Complemental strand, 10520321 - 10520217
Alignment:
| Q |
25 |
agtttagcccaaccgcaatttaaacgataaatatgaagacacactgcagaaatacgatgatcatatgcggctttcaacaaattatcgcaaattcgaggca |
124 |
Q |
| |
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|||||||||||||| ||| ||||| | | ||||||||| | || || ||||||| | |||||||||| |||||||| |||||| |||||||| |||| | |
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| T |
10520321 |
agtttagcccaaccccaacttaaatggtcgatatgaagataaacagcggaaatacaaggatcatatgctgctttcaagaaattaccgcaaatttgaggaa |
10520222 |
T |
|
| Q |
125 |
gagat |
129 |
Q |
| |
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||||| |
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| T |
10520221 |
gagat |
10520217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 136
Target Start/End: Original strand, 35803584 - 35803647
Alignment:
| Q |
73 |
gaaatacgatgatcatatgcggctttcaacaaattatcgcaaattcgaggcagagatgatacct |
136 |
Q |
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||||||||| ||||||| ||||||||||| |||| |||||||||| |||||||||| |||||| |
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| T |
35803584 |
gaaatacgaggatcataagcggctttcaagaaataatcgcaaatttcaggcagagataatacct |
35803647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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