View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11746_low_48 (Length: 259)
Name: NF11746_low_48
Description: NF11746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11746_low_48 |
 | |
|
| [»] chr1 (10 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] chr2 (4 HSPs) |
| |
|
| [»] chr6 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 17 - 259
Target Start/End: Original strand, 3300474 - 3300716
Alignment:
| Q |
17 |
cacagacttcacttcagttgtcagtccagtaggggcaaaagtgacaaccattccaggttttatgacaccagtctcgacacgccccacaggcacagtccca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3300474 |
cacagacttcacttcagttgtcagtccagtaggggcaaaagtgacaaccattccaggttttatgacaccagtctcgacacgccccacaggcacagtccca |
3300573 |
T |
|
| Q |
117 |
attcctccaatcttgtagacatcctgaagcggtagacggaggggcttgtctgatggcctcttaggctcgttgatttggtcaagagcctcaagaagggtag |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3300574 |
attcctccaatcttgtagacatcctgaagcggtagacggaggggcttgtctgatggcctcttaggctcgttgatttggtcaagagcctcaagaagggtag |
3300673 |
T |
|
| Q |
217 |
gacccttgtaccagtcaagatttgtagagcgctcgatcatgtt |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3300674 |
gacccttgtaccagtcaagatttgtagagcgctcgatcatgtt |
3300716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 21 - 259
Target Start/End: Original strand, 43044744 - 43044982
Alignment:
| Q |
21 |
gacttcacttcagttgtcagtccagtaggggcaaaagtgacaaccattccaggttttatgacaccagtctcgacacgccccacaggcacagtcccaattc |
120 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
43044744 |
gacttgacttcagttgtcagtccagtaggggcaaaagtgacaaccattccaggttttatgacaccagtctcgacacgccccacaggcacagttccaattc |
43044843 |
T |
|
| Q |
121 |
ctccaatcttgtagacatcctgaagcggtagacggaggggcttgtctgatggcctcttaggctcgttgatttggtcaagagcctcaagaagggtaggacc |
220 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||| ||||| |
|
|
| T |
43044844 |
ctccaatcttgtagacatcctgaagtggtagtcggaggggcttgtctgaaggcctcttaggctcattgatttggtcaagggcctcaagaagggttggacc |
43044943 |
T |
|
| Q |
221 |
cttgtaccagtcaagatttgtagagcgctcgatcatgtt |
259 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
43044944 |
cttgtaccagtcaaggtttgtagagcgctcgatcatgtt |
43044982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 21 - 259
Target Start/End: Complemental strand, 43067247 - 43067009
Alignment:
| Q |
21 |
gacttcacttcagttgtcagtccagtaggggcaaaagtgacaaccattccaggttttatgacaccagtctcgacacgccccacaggcacagtcccaattc |
120 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
43067247 |
gacttgacttcagttgtcagtccagtaggggcaaaagtgacaaccattccaggttttatgacaccagtctcgacacgccccacaggcacagttccaattc |
43067148 |
T |
|
| Q |
121 |
ctccaatcttgtagacatcctgaagcggtagacggaggggcttgtctgatggcctcttaggctcgttgatttggtcaagagcctcaagaagggtaggacc |
220 |
Q |
| |
|
||||||||||||||||||| ||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
43067147 |
ctccaatcttgtagacatcttgaagtggtagtcggaggggcttgtctgaaggcctcttaggctcgttgatttggtcaagggcctcaagaagggttggacc |
43067048 |
T |
|
| Q |
221 |
cttgtaccagtcaagatttgtagagcgctcgatcatgtt |
259 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
43067047 |
cttgtaccagtcaaggtttgtagagcgctcgatcatgtt |
43067009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 259
Target Start/End: Original strand, 43083584 - 43083826
Alignment:
| Q |
17 |
cacagacttcacttcagttgtcagtccagtaggggcaaaagtgacaaccattccaggttttatgacaccagtctcgacacgccccacaggcacagtccca |
116 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
43083584 |
cacagacttgacttcagttgtcagtccagtaggggcaaaagtgataaccattccaggttttatgacaccagtctcgacacgccccacaggcacagttcca |
43083683 |
T |
|
| Q |
117 |
attcctccaatcttgtagacatcctgaagcggtagacggaggggcttgtctgatggcctcttaggctcgttgatttggtcaagagcctcaagaagggtag |
216 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| | |
|
|
| T |
43083684 |
attcctccaatcttgtagacatcttgaagtggtagtcggaggggcttgtctgaaggcctcttaggctcgttgatttggtcaagtgcctcaagaagggttg |
43083783 |
T |
|
| Q |
217 |
gacccttgtaccagtcaagatttgtagagcgctcgatcatgtt |
259 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
43083784 |
gacccttgtaccagtcaaggtttgtagagcgctcgatcatgtt |
43083826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 17 - 255
Target Start/End: Complemental strand, 45984236 - 45983998
Alignment:
| Q |
17 |
cacagacttcacttcagttgtcagtccagtaggggcaaaagtgacaaccattccaggttttatgacaccagtctcgacacgccccacaggcacagtccca |
116 |
Q |
| |
|
||||||||||||||||| | ||| ||||| | ||||||||| | ||||||||||| || | | ||||||||| ||||| |||||||||||||| || |
|
|
| T |
45984236 |
cacagacttcacttcagcttgcagcccagttgcggcaaaagtcagcaccattccagggttcaaggaaccagtctcaacacgtcccacaggcacagttccg |
45984137 |
T |
|
| Q |
117 |
attcctccaatcttgtagacatcctgaagcggtagacggaggggcttgtctgatggcctcttaggctcgttgatttggtcaagagcctcaagaagggtag |
216 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| | ||| |||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||| | |
|
|
| T |
45984136 |
attcctccaatcttgtagacatcctgaagtggtattctgagaggcttgtctgatggcctcataggctcgttgatttggtcaatagcttcaagaagggttg |
45984037 |
T |
|
| Q |
217 |
gacccttgtaccagtcaagatttgtagagcgctcgatca |
255 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||| |||| |
|
|
| T |
45984036 |
gacccttgtaccaatcaagattagtagagcgctcaatca |
45983998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 17 - 259
Target Start/End: Complemental strand, 43077098 - 43076864
Alignment:
| Q |
17 |
cacagacttcacttcagttgtcagtccagtaggggcaaaagtgacaaccattccaggttttatgacaccagtctcgacacgccccacaggcacagtccca |
116 |
Q |
| |
|
||||||| | |||| || |||||||||||||||||||||||| || |||||||||||||| | |||||||||||| ||||| ||||||| ||||| ||| |
|
|
| T |
43077098 |
cacagacgtgactttagctgtcagtccagtaggggcaaaagtcaccaccattccaggtttcaagacaccagtctcaacacgtgccacaggtacagttcca |
43076999 |
T |
|
| Q |
117 |
attcctccaatcttgtagacatcctgaagcggtagacggaggggcttgtctgatggcctcttaggctcgttgatttggtcaagagcctcaagaagggtag |
216 |
Q |
| |
|
||||||| || ||||||||||| |||| |||||| |||||||||| ||||||||||||||||||||||||||||| ||| |||||||||| | |
|
|
| T |
43076998 |
attcctctaaacttgtagacatt--------gtagtcggaggtgcttgtctgaaggcctcttaggctcgttgatttggtcaagggccccaagaagggttg |
43076907 |
T |
|
| Q |
217 |
gacccttgtaccagtcaagatttgtagagcgctcgatcatgtt |
259 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
43076906 |
gacccttgtaccagttaaggtttgtagagcgctcgatcatgtt |
43076864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 32 - 247
Target Start/End: Complemental strand, 38138385 - 38138170
Alignment:
| Q |
32 |
agttgtcagtccagtaggggcaaaagtgacaaccattccaggttttatgacaccagtctcgacacgccccacaggcacagtcccaattcctccaatcttg |
131 |
Q |
| |
|
|||| |||| ||||| ||||||||||| || ||||||| ||||| | |||||| |||| || || |||||||||||||| |||||||||||||||||| |
|
|
| T |
38138385 |
agttttcagcccagttggggcaaaagtcaccgccattcctggtttcaagacaccgctctcaacccgtcccacaggcacagttccaattcctccaatcttg |
38138286 |
T |
|
| Q |
132 |
tagacatcctgaagcggtagacggaggggcttgtctgatggcctcttaggctcgttgatttggtcaagagcctcaagaagggtaggacccttgtaccagt |
231 |
Q |
| |
|
|||||||||||||| |||| ||||| ||||||||| || ||||||||||||| ||||||||||||||||| ||||||||||| |||||||| ||||||| |
|
|
| T |
38138285 |
tagacatcctgaagtggtaatcggagaggcttgtctaatagcctcttaggctccttgatttggtcaagagcttcaagaagggtgggacccttataccagt |
38138186 |
T |
|
| Q |
232 |
caagatttgtagagcg |
247 |
Q |
| |
|
|||| || |||||||| |
|
|
| T |
38138185 |
caaggttagtagagcg |
38138170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 48 - 259
Target Start/End: Original strand, 50912150 - 50912361
Alignment:
| Q |
48 |
ggggcaaaagtgacaaccattccaggttttatgacaccagtctcgacacgccccacaggcacagtcccaattcctccaatcttgtagacatcctgaagcg |
147 |
Q |
| |
|
||||||||||| || ||||||||| |||| | |||||| ||||| | ||| |||||||| ||| | |||||| ||||||||||||||||| ||||||| | |
|
|
| T |
50912150 |
ggggcaaaagtcaccaccattccacgtttcaagacaccggtctcaatacgtcccacaggtacaattccaatttctccaatcttgtagacaacctgaagtg |
50912249 |
T |
|
| Q |
148 |
gtagacggaggggcttgtctgatggcctcttaggctcgttgatttggtcaagagcctcaagaagggtaggacccttgtaccagtcaagatttgtagagcg |
247 |
Q |
| |
|
||| ||||| ||| ||| |||||| || |||||||| |||||||| |||||||| |||| |||||| ||||| |||||||||||||| || |||||||| |
|
|
| T |
50912250 |
gtaatcggagaggcatgtgtgatggtctattaggctccttgatttgatcaagagcttcaataagggtgggacctttgtaccagtcaaggttagtagagcg |
50912349 |
T |
|
| Q |
248 |
ctcgatcatgtt |
259 |
Q |
| |
|
||| || ||||| |
|
|
| T |
50912350 |
ctcaatgatgtt |
50912361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 17 - 259
Target Start/End: Complemental strand, 7891492 - 7891250
Alignment:
| Q |
17 |
cacagacttcacttcagttgtcagtccagtaggggcaaaagtgacaaccattccaggttttatgacaccagtctcgacacgccccacaggcacagtccca |
116 |
Q |
| |
|
||||||||||||||||||| || ||||| ||||||||||| | |||||||||||||| | || ||||| ||| || || |||||||||||| | ||| |
|
|
| T |
7891492 |
cacagacttcacttcagtttggagcccagttggggcaaaagtcagcaccattccaggtttcaagataccagactcaacgcgtcccacaggcacaattcca |
7891393 |
T |
|
| Q |
117 |
attcctccaatcttgtagacatcctgaagcggtagacggaggggcttgtctgatggcctcttaggctcgttgatttggtcaagagcctcaagaagggtag |
216 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||| ||||| ||| || | | |||||||||| ||| |||||||||||| ||||||||||| | |
|
|
| T |
7891392 |
attcctccaatcttgtagacatcttgaagtggtaatcggagaggcctgaatattaacctcttaggccttctgaattggtcaagagcttcaagaagggtgg |
7891293 |
T |
|
| Q |
217 |
gacccttgtaccagtcaagatttgtagagcgctcgatcatgtt |
259 |
Q |
| |
|
||||| ||||||| ||||| || | ||||||||| || ||||| |
|
|
| T |
7891292 |
gacccgtgtaccaatcaaggttagaagagcgctcaatgatgtt |
7891250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 17 - 259
Target Start/End: Complemental strand, 40035233 - 40034991
Alignment:
| Q |
17 |
cacagacttcacttcagttgtcagtccagtaggggcaaaagtgacaaccattccaggttttatgacaccagtctcgacacgccccacaggcacagtccca |
116 |
Q |
| |
|
||||||| ||||||||||| || ||||| ||||||||||| ||| ||||||| ||||| | |||||||||| ||||| || |||||||| ||| |
|
|
| T |
40035233 |
cacagacctcacttcagtttgcaccccagttggggcaaaagtcacagccattcctggtttcaagacaccagtcataacacgaccaacaggcacgactcca |
40035134 |
T |
|
| Q |
117 |
attcctccaatcttgtagacatcctgaagcggtagacggaggggcttgtctgatggcctcttaggctcgttgatttggtcaagagcctcaagaagggtag |
216 |
Q |
| |
|
|||||||||||| |||| ||| ||| | |||| ||||| ||||| |||||||||||||| || | ||||||||||| | ||| |||| |||||| | |
|
|
| T |
40035133 |
attcctccaatcatgtaaacagactggattggtaatcggagaggcttatctgatggcctcttcggtactttgatttggtcgatagcttcaaaaagggtgg |
40035034 |
T |
|
| Q |
217 |
gacccttgtaccagtcaagatttgtagagcgctcgatcatgtt |
259 |
Q |
| |
|
|||| |||||||| ||||| || ||||||||||| || ||||| |
|
|
| T |
40035033 |
gacctttgtaccaatcaaggttagtagagcgctcaatgatgtt |
40034991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 159; Significance: 9e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 17 - 259
Target Start/End: Original strand, 4231205 - 4231447
Alignment:
| Q |
17 |
cacagacttcacttcagttgtcagtccagtaggggcaaaagtgacaaccattccaggttttatgacaccagtctcgacacgccccacaggcacagtccca |
116 |
Q |
| |
|
||||||||| ||||||||| ||||||||| || |||||||| || |||||||||||||| ||| ||||||||| ||||| |||||||| ||||| ||| |
|
|
| T |
4231205 |
cacagacttgacttcagtttgcagtccagttggagcaaaagtcaccaccattccaggtttcatggtaccagtctcaacacgtcccacaggaacagttcca |
4231304 |
T |
|
| Q |
117 |
attcctccaatcttgtagacatcctgaagcggtagacggaggggcttgtctgatggcctcttaggctcgttgatttggtcaagagcctcaagaagggtag |
216 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| || | |
|
|
| T |
4231305 |
attcctccaatcttgtagacatcctgaagaggtagtcggaggggcttgtctgatggcctcttaggctcattgatttgatcaagagcctcaagaagtgttg |
4231404 |
T |
|
| Q |
217 |
gacccttgtaccagtcaagatttgtagagcgctcgatcatgtt |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
4231405 |
gacccttgtaccagtcaagatttgtagagcgctcaatcatgtt |
4231447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 116; Significance: 4e-59; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 16 - 255
Target Start/End: Original strand, 4619428 - 4619667
Alignment:
| Q |
16 |
gcacagacttcacttcagttgtcagtccagtaggggcaaaagtgacaaccattccaggttttatgacaccagtctcgacacgccccacaggcacagtccc |
115 |
Q |
| |
|
|||||||||| ||||||| | ||| ||| | ||||||||||| || | |||||||||||| | |||||| ||||| |||| |||||||||||||| || |
|
|
| T |
4619428 |
gcacagactttacttcagcttgcagcccaatcggggcaaaagtcaccatcattccaggtttcaagacaccggtctcaacacatcccacaggcacagttcc |
4619527 |
T |
|
| Q |
116 |
aattcctccaatcttgtagacatcctgaagcggtagacggaggggcttgtctgatggcctcttaggctcgttgatttggtcaagagcctcaagaagggta |
215 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||| ||||| ||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
4619528 |
aattcctccaatcttgtagacatcccgaagtggtaatcggagaggcttgtttgatggcctattaggctcgttgatttggtcaagagcttcaagaagggtg |
4619627 |
T |
|
| Q |
216 |
ggacccttgtaccagtcaagatttgtagagcgctcgatca |
255 |
Q |
| |
|
||||||| ||||||||||||||| | ||| ||||| |||| |
|
|
| T |
4619628 |
ggaccctcgtaccagtcaagattagaagaacgctcaatca |
4619667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 235
Target Start/End: Original strand, 1846229 - 1846447
Alignment:
| Q |
17 |
cacagacttcacttcagttgtcagtccagtaggggcaaaagtgacaaccattccaggttttatgacaccagtctcgacacgccccacaggcacagtccca |
116 |
Q |
| |
|
||||||||||||||||||| || ||||| ||||||||||| | |||||||||||||| | || ||||| ||| || || |||||||||||| | ||| |
|
|
| T |
1846229 |
cacagacttcacttcagtttggagcccagttggggcaaaagtcagcaccattccaggtttcaagataccagactcaacgcgtcccacaggcacaattcca |
1846328 |
T |
|
| Q |
117 |
attcctccaatcttgtagacatcctgaagcggtagacggaggggcttgtctgatggcctcttaggctcgttgatttggtcaagagcctcaagaagggtag |
216 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||| ||||| ||| || | | |||||||||| |||||||||||||||| ||||||||||| | |
|
|
| T |
1846329 |
attcctccaatcttgtagacatcttgaagtggtaatcggagaggcctgaatattaacctcttaggccttctgatttggtcaagagcttcaagaagggtgg |
1846428 |
T |
|
| Q |
217 |
gacccttgtaccagtcaag |
235 |
Q |
| |
|
||||| ||||||||||||| |
|
|
| T |
1846429 |
gacccgtgtaccagtcaag |
1846447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 83 - 247
Target Start/End: Complemental strand, 4787884 - 4787720
Alignment:
| Q |
83 |
accagtctcgacacgccccacaggcacagtcccaattcctccaatcttgtagacatcctgaagcggtagacggaggggcttgtctgatggcctcttaggc |
182 |
Q |
| |
|
||||||||||||||| ||||||| |||| || ||||||||||||||||||| |||| || ||||| ||||| ||| | |||||||||||||||| |
|
|
| T |
4787884 |
accagtctcgacacgtcccacagacacaactccgattcctccaatcttgtagaaatccataattggtagtcggagaggcaaatttgatggcctcttaggc |
4787785 |
T |
|
| Q |
183 |
tcgttgatttggtcaagagcctcaagaagggtaggacccttgtaccagtcaagatttgtagagcg |
247 |
Q |
| |
|
|| || ||| ||||| ||| ||||||||||| |||||| | |||||||||| ||| || ||||| |
|
|
| T |
4787784 |
tctttcattctgtcaatagcttcaagaagggtcggacccatttaccagtcaaaattagtggagcg |
4787720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 83 - 247
Target Start/End: Original strand, 4297288 - 4297452
Alignment:
| Q |
83 |
accagtctcgacacgccccacaggcacagtcccaattcctccaatcttgtagacatcctgaagcggtagacggaggggcttgtctgatggcctcttaggc |
182 |
Q |
| |
|
||||||||||||||| |||||||||||| | ||||||||||| || |||| |||||||| | ||| ||||| || | |||||||||| |||| |
|
|
| T |
4297288 |
accagtctcgacacggcccacaggcacatctctgattcctccaatattctagaaatcctgaattgatagtcggagaggaaaatttgatggcctcgcaggc |
4297387 |
T |
|
| Q |
183 |
tcgttgatttggtcaagagcctcaagaagggtaggacccttgtaccagtcaagatttgtagagcg |
247 |
Q |
| |
|
| || ||| ||||| ||| ||||||||||| ||||||||||||||||||| ||| || ||||| |
|
|
| T |
4297388 |
cctttcattatgtcaatagcttcaagaagggtgggacccttgtaccagtcaaaattagtggagcg |
4297452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 48 - 250
Target Start/End: Original strand, 16348918 - 16349120
Alignment:
| Q |
48 |
ggggcaaaagtgacaaccattccaggttttatgacaccagtctcgacacgccccacaggcacagtcccaattcctccaatcttgtagacatcctgaagcg |
147 |
Q |
| |
|
|||| |||||| || |||||||||||||| | |||||||||| ||||| || ||| || || |||||||||||||||||||||||| ||||||| | |
|
|
| T |
16348918 |
ggggaaaaagtcaccaccattccaggtttcaagacaccagtcctgacacatcctgcagccaaagctccaattcctccaatcttgtagacaccctgaagtg |
16349017 |
T |
|
| Q |
148 |
gtagacggaggggcttgtctgatggcctcttaggctcgttgatttggtcaagagcctcaagaagggtaggacccttgtaccagtcaagatttgtagagcg |
247 |
Q |
| |
|
||| ||||| |||||||||||| |||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||| ||||| ||||||||| | |
|
|
| T |
16349018 |
gtaatcggagaggcttgtctgatagcctcttaggctcgttgattcggtcaagagcttcaagaagggtgggacccttgtacccatcaagttttgtagaggg |
16349117 |
T |
|
| Q |
248 |
ctc |
250 |
Q |
| |
|
||| |
|
|
| T |
16349118 |
ctc |
16349120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 16 - 259
Target Start/End: Original strand, 34690585 - 34690828
Alignment:
| Q |
16 |
gcacagacttcacttcagttgtcagtccagtaggggcaaaagtgacaaccattccaggttttatgacaccagtctcgacacgccccacaggcacagtccc |
115 |
Q |
| |
|
|||||||||| ||| ||| | ||| ||||| ||||||||||| | |||||||||||||| | ||||||||||| ||||| || ||||| ||||| || |
|
|
| T |
34690585 |
gcacagacttaactccagattgcagcccagttggggcaaaagtcagcaccattccaggtttcaacacaccagtctcaacacgtccgacaggtacagttcc |
34690684 |
T |
|
| Q |
116 |
aattcctccaatcttgtagacatcctgaagcggtagacggaggggcttgtctgatggcctcttaggctcgttgatttggtcaagagcctcaagaagggta |
215 |
Q |
| |
|
|| ||||||||||||||||||| ||||| ||||| | | |||||| |||| |||||||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
34690685 |
aacacctccaatcttgtagacatgttgaagtggtagtctcaaaggcttgcctgaaggcctcttaggctcgtcgatttggtcaagagcttcaagaagggta |
34690784 |
T |
|
| Q |
216 |
ggacccttgtaccagtcaagatttgtagagcgctcgatcatgtt |
259 |
Q |
| |
|
||||| | |||||||||||| || || |||||||| || ||||| |
|
|
| T |
34690785 |
ggaccttcgtaccagtcaaggttagtcgagcgctcaatgatgtt |
34690828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 16 - 259
Target Start/End: Original strand, 34712997 - 34713240
Alignment:
| Q |
16 |
gcacagacttcacttcagttgtcagtccagtaggggcaaaagtgacaaccattccaggttttatgacaccagtctcgacacgccccacaggcacagtccc |
115 |
Q |
| |
|
|||||||||| ||| ||| | ||| ||||| ||||||||||| | |||||||||||||| | ||||||||||| ||||| || ||||| ||||| || |
|
|
| T |
34712997 |
gcacagacttaactccagattgcagcccagttggggcaaaagtcagcaccattccaggtttcaacacaccagtctcaacacgtccgacaggtacagttcc |
34713096 |
T |
|
| Q |
116 |
aattcctccaatcttgtagacatcctgaagcggtagacggaggggcttgtctgatggcctcttaggctcgttgatttggtcaagagcctcaagaagggta |
215 |
Q |
| |
|
|| ||||||||||||||||||| ||||| ||||| | | |||||| |||| |||||||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
34713097 |
aacacctccaatcttgtagacatgttgaagtggtagtctcaaaggcttgcctgaaggcctcttaggctcgtcgatttggtcaagagcttcaagaagggta |
34713196 |
T |
|
| Q |
216 |
ggacccttgtaccagtcaagatttgtagagcgctcgatcatgtt |
259 |
Q |
| |
|
||||| | |||||||||||| || || |||||||| || ||||| |
|
|
| T |
34713197 |
ggaccttcgtaccagtcaaggttagtcgagcgctcaatgatgtt |
34713240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 44 - 250
Target Start/End: Original strand, 16231954 - 16232160
Alignment:
| Q |
44 |
agtaggggcaaaagtgacaaccattccaggttttatgacaccagtctcgacacgccccacaggcacagtcccaattcctccaatcttgtagacatcctga |
143 |
Q |
| |
|
||||||||||||||| | |||||||| || |||| || |||||||| ||||| |||||||| ||||| ||||| ||||||||||||||||||| |||| |
|
|
| T |
16231954 |
agtaggggcaaaagtcagtaccattccgggctttaataccccagtctcaacacgtcccacaggtacagttccaatacctccaatcttgtagacatgctga |
16232053 |
T |
|
| Q |
144 |
agcggtagacggaggggcttgtctgatggcctcttaggctcgttgatttggtcaagagcctcaagaagggtaggacccttgtaccagtcaagatttgtag |
243 |
Q |
| |
|
|| || || || || |||||| || ||||||||||||||| |||||||||||| ||| |||| ||||||||| || | ||||||||||| || |||| |
|
|
| T |
16232054 |
aggggaagtcgcagaggcttgccttcgggcctcttaggctcgctgatttggtcaatagcttcaacaagggtaggcccatcataccagtcaaggttagtag |
16232153 |
T |
|
| Q |
244 |
agcgctc |
250 |
Q |
| |
|
||||||| |
|
|
| T |
16232154 |
agcgctc |
16232160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 193 - 255
Target Start/End: Original strand, 33860757 - 33860819
Alignment:
| Q |
193 |
ggtcaagagcctcaagaagggtaggacccttgtaccagtcaagatttgtagagcgctcgatca |
255 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
33860757 |
ggtcaagagcttcaagaagggtgggacccttgtaccagtcaagattagtagagcgctcaatca |
33860819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 259
Target Start/End: Complemental strand, 7520261 - 7520020
Alignment:
| Q |
18 |
acagacttcacttcagttgtcagtccagtaggggcaaaagtgacaaccattccaggttttatgacaccagtctcgacacgccccacaggcacagtcccaa |
117 |
Q |
| |
|
|||||||| ||||||||||||| ||||| || ||||||| |||||||| || || || | | ||| ||||| ||||| || || |||||||| |||| |
|
|
| T |
7520261 |
acagacttaacttcagttgtcaaaccagtgggtccaaaagtcacaaccataccgggcttcacaataccggtctcaacacgtccaactggcacagttccaa |
7520162 |
T |
|
| Q |
118 |
ttcctccaatcttgtagacatcctgaagcggtagacggaggggcttgtctgatggcctcttaggctcgttgatttggtcaagagcctcaagaagggtagg |
217 |
Q |
| |
|
| || ||||||||||| ||||| || | || || | |||||||||||||| || ||||| ||||||||||| ||||||||||||||||| || || || |
|
|
| T |
7520161 |
taccaccaatcttgtaaacatcttgcaatggaagcctgaggggcttgtctgtgggtctcttgggctcgttgatctggtcaagagcctcaaggagagttgg |
7520062 |
T |
|
| Q |
218 |
acccttgtaccagtcaagatttgtagagcgctcgatcatgtt |
259 |
Q |
| |
|
||||||||||||||||| || ||||| | ||| |||||||| |
|
|
| T |
7520061 |
tcccttgtaccagtcaaggttggtagacctctcaatcatgtt |
7520020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 7529798 - 7529581
Alignment:
| Q |
18 |
acagacttcacttcagttgtcagtccagtaggggcaaaagtgacaaccattccaggttttatgacaccagtctcgacacgccccacaggcacagtcccaa |
117 |
Q |
| |
|
|||||||| ||||||||||| || ||||| || ||||||| |||||||| || || || | | ||| ||||| ||||| || || |||||||| |||| |
|
|
| T |
7529798 |
acagacttaacttcagttgttagaccagtgggtccaaaagtcacaaccataccgggcttcacaataccggtctcaacacgtccgactggcacagttccaa |
7529699 |
T |
|
| Q |
118 |
ttcctccaatcttgtagacatcctgaagcggtagacggaggggcttgtctgatggcctcttaggctcgttgatttggtcaagagcctcaagaagggtagg |
217 |
Q |
| |
|
| || ||||||||||| ||||| || | || || | |||||||||||||| || ||||| ||||||||||| ||||||||||||||||| || || || |
|
|
| T |
7529698 |
taccaccaatcttgtaaacatcttgcaatggaagcctgaggggcttgtctgtgggtctcttgggctcgttgatctggtcaagagcctcaaggagagttgg |
7529599 |
T |
|
| Q |
218 |
acccttgtaccagtcaag |
235 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
7529598 |
tcccttgtaccagtcaag |
7529581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 255
Target Start/End: Complemental strand, 39242650 - 39242571
Alignment:
| Q |
178 |
taggctcgttgatttggtcaagagcc--tcaagaagggtaggacccttgtaccagtcaagatttgtagagcgctcgatca |
255 |
Q |
| |
|
|||||||||||| | |||||||||| ||||||||||| |||| ||||||||||||| ||| ||||||||||| |||| |
|
|
| T |
39242650 |
taggctcgttgaatcggtcaagagcgcttcaagaagggtgggactgttgtaccagtcaatattagtagagcgctcaatca |
39242571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University