View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11746_low_49 (Length: 258)

Name: NF11746_low_49
Description: NF11746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11746_low_49
NF11746_low_49
[»] chr1 (21 HSPs)
chr1 (20-258)||(13129988-13130226)
chr1 (18-258)||(13094559-13094799)
chr1 (20-258)||(13161681-13161919)
chr1 (19-258)||(13007360-13007599)
chr1 (23-254)||(13101164-13101395)
chr1 (27-258)||(13069977-13070208)
chr1 (24-258)||(13204619-13204853)
chr1 (23-255)||(19727316-19727548)
chr1 (23-258)||(30367905-30368140)
chr1 (19-125)||(13244311-13244417)
chr1 (23-258)||(13271746-13271984)
chr1 (19-224)||(19278958-19279166)
chr1 (154-254)||(13065141-13065241)
chr1 (23-258)||(13086267-13086505)
chr1 (23-109)||(12963705-12963791)
chr1 (154-258)||(12963803-12963907)
chr1 (26-105)||(13214132-13214211)
chr1 (154-210)||(13080793-13080849)
chr1 (23-110)||(13065010-13065097)
chr1 (155-258)||(13244450-13244553)
chr1 (19-115)||(13080655-13080751)
[»] chr8 (1 HSPs)
chr8 (175-229)||(36668314-36668368)
[»] chr6 (1 HSPs)
chr6 (19-107)||(31396468-31396557)
[»] chr7 (1 HSPs)
chr7 (175-229)||(12164462-12164516)


Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 20 - 258
Target Start/End: Complemental strand, 13130226 - 13129988
Alignment:
Q  20 caattagttcagctctcagttggtttttctggcttctttcaacttatcctattgtggaagaaaaaatcattcaagagatcaaagataattggttaacaca 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13130226 caattagttcagctctcagttggtttttctggcttctttcaacttatcctattgtggaagaaaaaatcattcaagagatcaaagataattggttaacaca 13130127  T
Q  120 agaggataatcggattactttgagggatgtggatcttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcctatacct 219  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13130126 agagggtaatcggattactttgaggcatgtggatcttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcctatacct 13130027  T
Q  220 tttgagcatatctgttcaatcaaatctgatatactacct 258  Q
    |||||||||||||||||||||||||||||||||||||||    
T  13130026 tttgagcatatctgttcaatcaaatctgatatactacct 13129988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 18 - 258
Target Start/End: Complemental strand, 13094799 - 13094559
Alignment:
Q  18 tacaattagttcagctctcagttggtttttctggcttctttcaacttatcctattgtggaagaaaaaatcattcaagagatcaaagataattggttaaca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  13094799 tacaattagttcagctctcagttggtttttctggcttctttcaacttatcctattgtggaagaaaaaatcattcaagagatcagagataattggttaaca 13094700  T
Q  118 caagaggataatcggattactttgagggatgtggatcttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcctatac 217  Q
    | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  13094699 cgagaggattatcggattactttgagggatgtggatcttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcctgtac 13094600  T
Q  218 cttttgagcatatctgttcaatcaaatctgatatactacct 258  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  13094599 cttttgagcatatctgtgcaatcaaatctgatatactacct 13094559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 20 - 258
Target Start/End: Complemental strand, 13161919 - 13161681
Alignment:
Q  20 caattagttcagctctcagttggtttttctggcttctttcaacttatcctattgtggaagaaaaaatcattcaagagatcaaagataattggttaacaca 119  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  13161919 caattagttcagctctcagttggtttttctggctcctttcaacttatcctattgtggaagaaaaaatcattcaagagatcaaagataattggctaacaca 13161820  T
Q  120 agaggataatcggattactttgagggatgtggatcttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcctatacct 219  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  13161819 agaggataatcggattattttgagggatgtggttcttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatccacctatacct 13161720  T
Q  220 tttgagcatatctgttcaatcaaatctgatatactacct 258  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  13161719 tttgagcatatctgtgcaatcaaatccgatatactacct 13161681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 19 - 258
Target Start/End: Complemental strand, 13007599 - 13007360
Alignment:
Q  19 acaattagttcagctctcagttggtttttctggcttctttcaacttatcctattgtggaagaaaaaatcattcaagagatcaaagataattggttaacac 118  Q
    ||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||  ||||| |||||||| ||||||||||| |||   ||||    
T  13007599 acaattagttcaggtctcagttggtttttctggcttgtttcaactcatcctattgtggaagccaaaattattcaagaaatcaaagataactggcccacac 13007500  T
Q  119 aagaggataatcggattactttgagggatgtggatcttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcctatacc 218  Q
    ||||||| |||| || | ||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||| || | ||||||||||||||| ||||    
T  13007499 aagaggagaatcagactcctttgagagatgtggatcttgataagctagtgtacctccatggagctctatgtgaagccatgaggctttatcctcctgtacc 13007400  T
Q  219 ttttgagcatatctgttcaatcaaatctgatatactacct 258  Q
    |||||||||||||||| ||||||| || ||||||||||||    
T  13007399 ttttgagcatatctgtgcaatcaattccgatatactacct 13007360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 23 - 254
Target Start/End: Complemental strand, 13101395 - 13101164
Alignment:
Q  23 ttagttcagctctcagttggtttttctggcttctttcaacttatcctattgtggaagaaaaaatcattcaagagatcaaagataattggttaacacaaga 122  Q
    |||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||  ||||| |||||||| ||||||||||| ||    ||||||||    
T  13101395 ttagttcagctctcagttggtttttctggcttgtttccactcatcctattgtggaagccaaaataattcaagaaatcaaagataactgtcctacacaaga 13101296  T
Q  123 ggataatcggattactttgagggatgtggatcttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcctatacctttt 222  Q
    ||| |||| |||| ||| ||| |||| | |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  13101295 ggagaatcagattccttcgagagatgagtatcttgataagctagtgtacctccatggagctatatgtgaaaccttgaggctttatcctcctgtacctttt 13101196  T
Q  223 gagcatatctgttcaatcaaatctgatatact 254  Q
    |||||||| |||||||||||||| ||||||||    
T  13101195 gagcatatatgttcaatcaaatccgatatact 13101164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 27 - 258
Target Start/End: Original strand, 13069977 - 13070208
Alignment:
Q  27 ttcagctctcagttggtttttctggcttctttcaacttatcctattgtggaagaaaaaatcattcaagagatcaaagataattggttaacacaagaggat 126  Q
    ||||| |||||||||||||||||||||| |||||||| |||||||||||||||  ||||| |||||||| || |||||||| |||   |||||||||||     
T  13069977 ttcaggtctcagttggtttttctggcttgtttcaactcatcctattgtggaagccaaaattattcaagaaataaaagataactggcccacacaagaggag 13070076  T
Q  127 aatcggattactttgagggatgtggatcttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcctataccttttgagc 226  Q
    |||| || | ||| ||| ||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| || |||||||||||| ||||||||||||    
T  13070077 aatcagactccttggagagatgtggatcttgataatctagtgtaccttcatggagctatatgtgaaaccttgagactttatcctcctgtaccttttgagc 13070176  T
Q  227 atatctgttcaatcaaatctgatatactacct 258  Q
    |||| ||| |||||||||| ||||||||||||    
T  13070177 atatatgtgcaatcaaatccgatatactacct 13070208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 24 - 258
Target Start/End: Complemental strand, 13204853 - 13204619
Alignment:
Q  24 tagttcagctctcagttggtttttctggcttctttcaacttatcctattgtggaagaaaaaatcattcaagagatcaaagataattggttaacacaagag 123  Q
    |||||||| ||| ||||||||||| |||||| |||| ||| |||||||||||||||  ||||| |||||||| ||||||||||| ||    |||||||||    
T  13204853 tagttcaggtctaagttggtttttttggcttgtttccactcatcctattgtggaagccaaaataattcaagaaatcaaagataactgtcctacacaagag 13204754  T
Q  124 gataatcggattactttgagggatgtggatcttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcctataccttttg 223  Q
    || |||| |||| ||| ||| |||| | |||||||||||||||| ||||| |||||||||||||||||| |||| || |||||||||||| |||||||||    
T  13204753 gagaatcagattccttcgagagatgagtatcttgataagctagtgtaccttcatggagctatatgtgaagccttgagactttatcctcctgtaccttttg 13204654  T
Q  224 agcatatctgttcaatcaaatctgatatactacct 258  Q
    ||||||| ||| |||||||||| ||||||||||||    
T  13204653 agcatatatgtgcaatcaaatccgatatactacct 13204619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 23 - 255
Target Start/End: Complemental strand, 19727548 - 19727316
Alignment:
Q  23 ttagttcagctctcagttggtttttctggcttctttcaacttatcctattgtggaagaaaaaatcattcaagagatcaaagataattggttaacacaaga 122  Q
    ||||| ||| ||||||||||||||| |||||| |||| ||| |||||||||| ||||  ||||| |||||||| ||||||||||| |||   ||||||||    
T  19727548 ttagtacaggtctcagttggtttttttggcttgtttcgactcatcctattgtcgaagccaaaattattcaagaaatcaaagataactggcccacacaaga 19727449  T
Q  123 ggataatcggattactttgagggatgtggatcttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcctatacctttt 222  Q
    ||| || | || | ||||||| ||||||||||||||||||||||| |||||||| |||| | ||||| || |||| || |||||||||||| ||||||||    
T  19727448 ggagaaccagactcctttgagagatgtggatcttgataagctagtgtacctccacggagatctatgttaagccttgagactttatcctcctgtacctttt 19727349  T
Q  223 gagcatatctgttcaatcaaatctgatatacta 255  Q
    |||||||| ||| ||||||||||| ||||||||    
T  19727348 gagcatatatgtgcaatcaaatctcatatacta 19727316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 23 - 258
Target Start/End: Original strand, 30367905 - 30368140
Alignment:
Q  23 ttagttcagctctcagttggtttttctggcttctttcaacttatcctattgtggaagaaaaaatcattcaagagatcaaagataattggttaacacaaga 122  Q
    ||||||||  |||||||||||||||||||||| |||||||| |||||||||||||||  ||||| |||||||||||||||||||||||  || || || |    
T  30367905 ttagttcaagtctcagttggtttttctggcttgtttcaactcatcctattgtggaagccaaaattattcaagagatcaaagataattgtgtatcaaaaca 30368004  T
Q  123 ggataatcggattactttgagggatgtggatcttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcctatacctttt 222  Q
     || ||| |||| ||||  | ||  |     |||||||||||||| |||||||||||||||||||||||| || | ||| | |||||| || ||||||||    
T  30368005 tgagaattggataacttcaatggtggaaagccttgataagctagtctacctccatggagctatatgtgaatccatgaggttgtatcctactgtacctttt 30368104  T
Q  223 gagcatatctgttcaatcaaatctgatatactacct 258  Q
    |||| |||| || |||||||||||||||||||||||    
T  30368105 gagcttatcagtgcaatcaaatctgatatactacct 30368140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 125
Target Start/End: Original strand, 13244311 - 13244417
Alignment:
Q  19 acaattagttcagctctcagttggtttttctggcttctttcaacttatcctattgtggaagaaaaaatcattcaagagatcaaagataattggttaacac 118  Q
    ||||||||||||| ||| |||||||| || |||||| |||||||| ||||||||| |||||  ||||| |||||||||||||||||||||||  ||||||    
T  13244311 acaattagttcaggtctaagttggttcttttggcttgtttcaactcatcctattggggaagcgaaaattattcaagagatcaaagataattgtctaacac 13244410  T
Q  119 aagagga 125  Q
    |||||||    
T  13244411 aagagga 13244417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 23 - 258
Target Start/End: Complemental strand, 13271984 - 13271746
Alignment:
Q  23 ttagttcagctctcagttggtttttctggcttctttcaacttatcctattgtggaagaaaaaatcattcaagagatcaaagataattggttaacacaaga 122  Q
    ||||||||| ||| |||||||| || |||||| |||||||| |||||| |||||||| |||| | |||||||||||||||||| ||||  ||||||||||    
T  13271984 ttagttcaggtctaagttggttcttttggcttgtttcaactcatcctaatgtggaagcaaaacttattcaagagatcaaagatcattgtctaacacaaga 13271885  T
Q  123 ggataatcggat---tactttgagggatgtggatcttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcctatacct 219  Q
    ||| |||  |||   || ||| |  | ||   |  ||||||||||  | ||||| |||| |||||||||||||||||| || |||||||||||||||||     
T  13271884 ggagaatttgatcaataatttaaatgttgaaaacattgataagctgatttaccttcatgcagctatatgtgaaaccttgagactttatcctcctatacca 13271785  T
Q  220 tttgagcatatctgttcaatcaaatctgatatactacct 258  Q
    ||||| || |  ||| || | || |||||||||||||||    
T  13271784 tttgatcacaagtgtgcagttaattctgatatactacct 13271746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 224
Target Start/End: Original strand, 19278958 - 19279166
Alignment:
Q  19 acaattagttcagctctcagttggtttttctggcttctttcaacttatcctattgtggaagaaaaaatcattcaagagatcaaagataattggttaacac 118  Q
    ||||||||||| | ||||| |||||| || |||||  | |||||| |||||||||| |||| |||||| |||||||||||||| | ||| || ||||||     
T  19278958 acaattagttcgggtctcaattggttcttttggctcgtatcaactcatcctattgtcgaagcaaaaattattcaagagatcaaggttaactgtttaacaa 19279057  T
Q  119 aagaggataatcggattac---tttgagggatgtggatcttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcctat 215  Q
    |||||||||||  ||| ||   ||| || |     || |||||||||||||| || || |||||||||||||||||| |||||||||||||||| ||| |    
T  19279058 aagaggataatttgatcacaaattttagtgtgaaagagcttgataagctagtttatcttcatggagctatatgtgaagccttaaggctttatccacctgt 19279157  T
Q  216 accttttga 224  Q
    ||| |||||    
T  19279158 accatttga 19279166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 154 - 254
Target Start/End: Original strand, 13065141 - 13065241
Alignment:
Q  154 cttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcctataccttttgagcatatctgttcaatcaaatctgatatac 253  Q
    |||||||| ||| | |||||||| ||||||||||||||| |||||||||||||||||||| ||||| | ||||| |  | | |||||||| |||||||||    
T  13065141 cttgataaactaatttacctccacggagctatatgtgaagccttaaggctttatcctcctgtacctatcgagcaaaagtttgcaatcaaagctgatatac 13065240  T
Q  254 t 254  Q
    |    
T  13065241 t 13065241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 258
Target Start/End: Complemental strand, 13086505 - 13086267
Alignment:
Q  23 ttagttcagctctcagttggtttttctggcttctttcaacttatcctattgtggaagaaaaaatcattcaagagatcaaagataattggttaacacaaga 122  Q
    ||||||||| ||| |||||||| |  |||||| |||||||| ||   || |||||||  ||||| ||||||||||| |||||||||||  || |||| ||    
T  13086505 ttagttcaggtctaagttggttctcttggcttgtttcaactcatttcatagtggaagctaaaataattcaagagataaaagataattgtctatcacatga 13086406  T
Q  123 ggataatcgg---attactttgagggatgtggatcttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcctatacct 219  Q
    |||||||  |   | || ||| || | ||   | ||| |||| ||||| ||||| |||||||||||||||||| | || ||||||||||||||| ||||     
T  13086405 ggataatttggtcactaatttaagagttgaaaagcttaataaactagtgtaccttcatggagctatatgtgaagcattgaggctttatcctcctgtacca 13086306  T
Q  220 tttgagcatatctgttcaatcaaatctgatatactacct 258  Q
    ||| |||| |  ||| |||||||| ||||||||||||||    
T  13086305 tttcagcacaagtgtgcaatcaaagctgatatactacct 13086267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 109
Target Start/End: Original strand, 12963705 - 12963791
Alignment:
Q  23 ttagttcagctctcagttggtttttctggcttctttcaacttatcctattgtggaagaaaaaatcattcaagagatcaaagataatt 109  Q
    ||||||||| ||| |||||||| || |||||| |||||||| ||||||||||||||   ||||| ||||||||||| ||||||||||    
T  12963705 ttagttcaggtctaagttggttcttttggcttgtttcaactcatcctattgtggaaactaaaattattcaagagattaaagataatt 12963791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 154 - 258
Target Start/End: Original strand, 12963803 - 12963907
Alignment:
Q  154 cttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcctataccttttgagcatatctgttcaatcaaatctgatatac 253  Q
    ||||||||||| || || || ||||||||||| |||||| | ||||||||||||||||||||||| ||||| || |  ||| |||| ||||| ||||||     
T  12963803 cttgataagcttgtttatcttcatggagctatttgtgaagctttaaggctttatcctcctataccatttgaacacaagtgtgcaattaaatcagatatat 12963902  T
Q  254 tacct 258  Q
    |||||    
T  12963903 tacct 12963907  T

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Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 26 - 105
Target Start/End: Complemental strand, 13214211 - 13214132
Alignment:
Q  26 gttcagctctcagttggtttttctggcttctttcaacttatcctattgtggaagaaaaaatcattcaagagatcaaagat 105  Q
    |||||| ||||| |||||||||||||||| |||||||| ||| |||||||||||  ||||| |||||||| || ||||||    
T  13214211 gttcaggtctcatttggtttttctggcttgtttcaactcatcttattgtggaagctaaaattattcaagaaataaaagat 13214132  T

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Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 154 - 210
Target Start/End: Original strand, 13080793 - 13080849
Alignment:
Q  154 cttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcct 210  Q
    |||||||||||||| ||||| |||||||| ||||||||| |||||||||| ||||||    
T  13080793 cttgataagctagtttaccttcatggagccatatgtgaagccttaaggctatatcct 13080849  T

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Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 13065010 - 13065097
Alignment:
Q  23 ttagttcagctctcagttggtttttctggcttctttcaacttatcctattgtggaagaaaaaatcattcaagagatcaaagataattg 110  Q
    ||||||||| |||||||||||| || |||||| |||||  | ||||| |||||||||  || || ||||||||||| |||||||||||    
T  13065010 ttagttcaggtctcagttggttcttttggcttgtttcatgtcatcctgttgtggaagccaagattattcaagagatgaaagataattg 13065097  T

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Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 258
Target Start/End: Original strand, 13244450 - 13244553
Alignment:
Q  155 ttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcctataccttttgagcatatctgttcaatcaaatctgatatact 254  Q
    |||||||||| || ||||| |||||||| |||||||||||||| ||||| ||||||||| |  | ||| |||| |  ||  | |||||||||||||||||    
T  13244450 ttgataagcttgtttaccttcatggagccatatgtgaaaccttgaggctatatcctcctctggcatttcagcacaagtgcgctatcaaatctgatatact 13244549  T
Q  255 acct 258  Q
    ||||    
T  13244550 acct 13244553  T

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Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 115
Target Start/End: Original strand, 13080655 - 13080751
Alignment:
Q  19 acaattagttcagctctcagttggtttttctggcttctttcaacttatcctattgtggaagaaaaaatcattcaagagatcaaagataattggttaa 115  Q
    ||||||||| ||| ||||| ||||||||| |||||  |||||||  ||||||  || || |  ||||| ||||||||||||||||||||||| ||||    
T  13080655 acaattagtacaggtctcacttggtttttttggctggtttcaacgcatcctagggtagatggtaaaattattcaagagatcaaagataattgtttaa 13080751  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 229
Target Start/End: Complemental strand, 36668368 - 36668314
Alignment:
Q  175 catggagctatatgtgaaaccttaaggctttatcctcctataccttttgagcata 229  Q
    ||||||||| |||||||| |||||||||||||||| || ||||||||||||||||    
T  36668368 catggagctttatgtgaagccttaaggctttatccaccaataccttttgagcata 36668314  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 31396468 - 31396557
Alignment:
Q  19 acaattagttcagctctcagttggtttttctggctt-ctttcaacttatcctattgtggaagaaaaaatcattcaagagatcaaagataa 107  Q
    ||||||||||||  |||| |||||||||||||||||  |||||||| |||||| ||||||||  ||||| |||||||||||  |||||||    
T  31396468 acaattagttcaagtctcggttggtttttctggcttgttttcaactcatcctaatgtggaagccaaaattattcaagagattcaagataa 31396557  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 229
Target Start/End: Complemental strand, 12164516 - 12164462
Alignment:
Q  175 catggagctatatgtgaaaccttaaggctttatcctcctataccttttgagcata 229  Q
    ||||||||| |||||||| |||| ||||||||||| || ||||||||||||||||    
T  12164516 catggagctttatgtgaagccttgaggctttatccgccgataccttttgagcata 12164462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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