View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11746_low_5 (Length: 783)
Name: NF11746_low_5
Description: NF11746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11746_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 517; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 18 - 554
Target Start/End: Original strand, 3452208 - 3452744
Alignment:
| Q |
18 |
gaagaaataccgatcgaacaagtcgtcgtgatccccgcgccaccacgctccgccatatataaccagaatccatcttagaaataaaattagcatttttaca |
117 |
Q |
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| T |
3452208 |
gaagaaataccgatcgaacaagtcgccgtgatccccgcgccaccacgctccgccatatataaccagaatccatcttagaaataaaattagcatttttaca |
3452307 |
T |
|
| Q |
118 |
tatcaacacagcacctttaccactcaactttgctaacctcaacactcttgtaaaatcctttctccgagaatcaacaaccaagaaatctattcctactaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3452308 |
tatcaacacagcacctttaccactcaactttgctaacctcaacactcttgtaaaatcctttctccgagaatcaacaaccaagaaatctattcctactaaa |
3452407 |
T |
|
| Q |
218 |
ccatccataacttcttctggttctccaactataatctccggcgacataccagcttctcccatgttttttgaatactctgatcttgaccgttcatcaggaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
3452408 |
ccatccataacttcttctggttctccaactataatctccggcgacataccagcttctcccatgttttttgcatactctgatcttgattgttcatcaggaa |
3452507 |
T |
|
| Q |
318 |
ctatgcacacgtgtcttccacctgtgtgaccgcttgctatggataaaccaacactcgttgggataactccgccgtgtgaccatgtttctactatcagctg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3452508 |
ctatgcacacgtgtcttccacctgtgtgaccgcttgctatggataaaccaacactcgttgggataactccgccgtgtgaccatgtttctactatcagctg |
3452607 |
T |
|
| Q |
418 |
agcgttccatcctgctgccatagaggataccagctccgccgcaccggattcgctagaaaggtgattgatggtggttatggcttgaactgtgtcgatgtat |
517 |
Q |
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| T |
3452608 |
agcgttccatcctgctgccatagaggataccagctccgccgcaccggattcgctagaaaggtgattgatggtggttatcgcttgaactgtgtcgatgtat |
3452707 |
T |
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| Q |
518 |
gagtttgttgctctctctggggaccatactagtttca |
554 |
Q |
| |
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| T |
3452708 |
gagtttgttgctctctctggggaccatactagtttca |
3452744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 34 - 554
Target Start/End: Original strand, 3462246 - 3462763
Alignment:
| Q |
34 |
aacaagtcgtcgtgatccccgcgccaccacgctccgccatatataaccagaatccatcttagaaataaaattagcatttttacatatcaacacagcacct |
133 |
Q |
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|||||||| ||| || |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||| |
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| T |
3462246 |
aacaagtcttcgcgagcccctcgccaccacgctccgccacatataaccagaatccatcttagaaataaaattagcattcttacatatcaatacagaacct |
3462345 |
T |
|
| Q |
134 |
ttaccactcaactttgctaacctcaacactcttgtaaaatcctttctccgagaatcaacaaccaagaaatctattcctactaaaccatccataacttctt |
233 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||| ||||| | |
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| T |
3462346 |
ttaccactcaactttgctaacctcaacactctagtaaaatcttttctccgagaatcaacaaccaagaaatctattccgatcaaaccatccatcacttcct |
3462445 |
T |
|
| Q |
234 |
ctggttctccaactataatctccggcgacataccagcttctcccatgttttttgaatactctgatcttgaccgttcatcaggaactatgcacacgtgtct |
333 |
Q |
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| T |
3462446 |
ccggttctcctaccaaaacctccggtgacataccagcttctaacatattttttgcatactctgatcttgagagttcatcaggaactatacacacgtgtct |
3462545 |
T |
|
| Q |
334 |
tccacctgtgtgaccgcttgctatggataaaccaacactcgttgggataactccgccgtgtgaccatgtttctactatcagctgagcgttccatcctgct |
433 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||| |||||||||||||||||||| |
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| T |
3462546 |
tccaccattgtgaccgcttgctatggataaaccaacactcgttggaataactccgccacatgaccatgtttccactataagctgagcgttccatcctgcc |
3462645 |
T |
|
| Q |
434 |
gccatagaggataccagctccgccgcaccggattcgctagaaaggtgattgatggtggttatggcttgaactgtgtcgatgtatgagtttgttgctctct |
533 |
Q |
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| T |
3462646 |
gccatagctgaaacaaactccgccacaccagattcactgacaaggtgat---tggtggttacggcttgaactgtgtctatgtatgagttagttgctctct |
3462742 |
T |
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| Q |
534 |
ctggggaccatactagtttca |
554 |
Q |
| |
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|||||||||| || ||||||| |
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| T |
3462743 |
ctggggaccaaacaagtttca |
3462763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 654 - 777
Target Start/End: Original strand, 3452844 - 3452967
Alignment:
| Q |
654 |
ggaagaaatgggtgtagagggttatatttatgggtgttaagggacaaaacatttgacttttcgtctttgggctatgtttcgtaacgtattggattacgat |
753 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3452844 |
ggaagaaatgggtgtagtgggttatatttatgggtgttaagggacaaaacatttgacttttcgtctttgggctatgtttcgtaacgtattggattacgat |
3452943 |
T |
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| Q |
754 |
agcaagttgcactgttcatctcac |
777 |
Q |
| |
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||||||||||||||||| |||||| |
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| T |
3452944 |
agcaagttgcactgttcttctcac |
3452967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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