View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11746_low_50 (Length: 256)
Name: NF11746_low_50
Description: NF11746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11746_low_50 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 49755918 - 49756171
Alignment:
| Q |
1 |
tggcttgccctgcttcccctgttcattacaagtttaatcctgtcaagaccatcatatcctttttccaaattt----atttattatttacatattgcatga |
96 |
Q |
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| T |
49755918 |
tggcttgccctgcttcccctgttcattacaagtttaatcctgtcaagaccatcatatcctttttccaaatttatttatttattatttacatattgcatga |
49756017 |
T |
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| Q |
97 |
tcaaaatttctaatccaaagcatgttttgcacgcgacaagtacacgcgtctgacac-atatga------ttacgttctattatataatttttcccaaatt |
189 |
Q |
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| T |
49756018 |
tcaaaatttctaatccaaagcatgttttgcacgcgacaagtacacgcgtctgacacaatttgacacatgtgattttctattatataatttttcccaaatt |
49756117 |
T |
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| Q |
190 |
actaccattcttgacatgtaataaatgtaagtattgtgtcacacgtctgtgcctatg |
246 |
Q |
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| T |
49756118 |
actaccattcttaacatg---taaatgtaagtattgtgtcacacgtctgtgcctatg |
49756171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 39567349 - 39567287
Alignment:
| Q |
3 |
gcttgccctgcttcccctgttcattacaagtttaatcctgtcaagaccatcatatcctttttc |
65 |
Q |
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| T |
39567349 |
gcttgtcctgcttctcctgttcattacaagttcaaccccgtcaaaactatcatatcctttttc |
39567287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 64
Target Start/End: Original strand, 29127155 - 29127210
Alignment:
| Q |
9 |
cctgcttcccctgttcattacaagtttaatcctgtcaagaccatcatatccttttt |
64 |
Q |
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|||||||| ||||||||||| |||| ||| ||| ||||||| |||||||||||||| |
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| T |
29127155 |
cctgcttcacctgttcattataagtataaccctatcaagacaatcatatccttttt |
29127210 |
T |
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