View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11746_low_55 (Length: 242)
Name: NF11746_low_55
Description: NF11746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11746_low_55 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 170; Significance: 2e-91; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 53 - 242
Target Start/End: Original strand, 43474419 - 43474608
Alignment:
| Q |
53 |
acattataccttatcagggtcgccaatcacattaatcaatttccacagctaaatctttcaaaatctcctcaaacacataataataccaaatgttgtgcaa |
152 |
Q |
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| T |
43474419 |
acattataccgtatcagggttgccaatcacattaatcaatttccacagctaaatctttcaaaatctccgcaaacacataataataccaaatgttgtgcaa |
43474518 |
T |
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| Q |
153 |
aataacaaaatagttttttataggttaatcttggaagaattgtggttaatttatccaacgtttgatgaaaattaatcatacaagtaaatt |
242 |
Q |
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| T |
43474519 |
aataacaaaatagttttttataggttaatcttggaagaattgtggttaatttatccgacgattgatgaaaattaatcatacaagtaaatt |
43474608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 43484395 - 43484515
Alignment:
| Q |
18 |
aggacaacgttgttgttgctgtatagttcaatttaacattataccttatcagggtcgccaatcacattaatcaatttccacagctaaatctttcaaaatc |
117 |
Q |
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| T |
43484395 |
aggacaacgatgttgttgctgtacaatccaatttaactttaaaccgtatcaaggtcaccaatcacattact-aattcacatagctaaatctttcaaaatc |
43484493 |
T |
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| Q |
118 |
tcc--tcaaacacataataata |
137 |
Q |
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| T |
43484494 |
tccaaacaaacacataataata |
43484515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 59
Target Start/End: Original strand, 43474347 - 43474385
Alignment:
| Q |
21 |
acaacgttgttgttgctgtatagttcaatttaacattat |
59 |
Q |
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| T |
43474347 |
acaacgatgttgttgttgtatagttcaatttaacattat |
43474385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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