View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11746_low_57 (Length: 241)
Name: NF11746_low_57
Description: NF11746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11746_low_57 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 16 - 234
Target Start/End: Original strand, 3878385 - 3878602
Alignment:
| Q |
16 |
cagttgtgagcatgtgtaggcgttatccgaatgctacatcattgagcatatcaggaccaactattgatttgctggtcatgaaggcaatgtctttgctaag |
115 |
Q |
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| T |
3878385 |
cagttgtgagcatgtgtaggcgttatccgaatgctacatcattgagcatatcaggacctactattgatttgctggtcatgaaggcaatgtctttgctaag |
3878484 |
T |
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| Q |
116 |
gttaggtattttgtgtgacattgcactgaatcaagtcatgttggattctggctgatttgtttcattattttcaggaagctggaggttttaacattaggaa |
215 |
Q |
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| T |
3878485 |
gt-aggtattttgtgtgacattgcactgaatcaagtcatgttggattctggctgatttgtttcattattttcaggaagctcgaggttttaacattaggaa |
3878583 |
T |
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| Q |
216 |
gaggacaaataggggatgc |
234 |
Q |
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| T |
3878584 |
gaggacaaataggggatgc |
3878602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 26 - 234
Target Start/End: Original strand, 3864388 - 3864595
Alignment:
| Q |
26 |
catgtgtaggcgttatccgaatgctacatcattgagcatatcaggaccaactattgatttgctggtcatgaaggcaatgtctttgctaaggttaggtatt |
125 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||| |||||| | ||| |||||||| |
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| T |
3864388 |
catgtgtaggcgttatccgaatgctacagcattgagcatatcaggaccttctatttatttgctggtcatgaaggcaatctctttgtttagg-taggtatt |
3864486 |
T |
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| Q |
126 |
ttgtgtgacattgcactgaatcaagtcatgttggattctggctgatttgtttcattattttcaggaagctggaggttttaacattaggaagaggacaaat |
225 |
Q |
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| T |
3864487 |
ttgtgcgacttcgcattgaatcaagccatcttagactccagcttatttgtttcattcttttcaggaatcttgaggttttaacattgggaagaggacagat |
3864586 |
T |
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| Q |
226 |
aggggatgc |
234 |
Q |
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| T |
3864587 |
aggggatgc |
3864595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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