View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11746_low_58 (Length: 241)
Name: NF11746_low_58
Description: NF11746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11746_low_58 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 3879244 - 3879475
Alignment:
| Q |
1 |
tcaatggctgcaatagctcatggctctatgttggaggtattttatctgtcccagattttgatattaatgacatgtctgaattcatgaggattacgattaa |
100 |
Q |
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| T |
3879244 |
tcaatggctgctatagctcatagctctatgttggaggtattttatctgtcccagatattgatattaatgacatgtctgaattcatgagtattacgattaa |
3879343 |
T |
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| Q |
101 |
tccattttgtcaccccgccaatgcaggttttgtaactccgcagttgcagtctattgacttaagcgtcgttggatcttccacgtttgaagaatattagatt |
200 |
Q |
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| T |
3879344 |
tacatttaaccaccccgccaatgcaggttttgtaactccgcagttgcagtctattgacttgagcgtcgttggatcttccacatttgaagaatattagatt |
3879443 |
T |
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| Q |
201 |
ggcgtactgtcgcaagtatgtttctgcttcat |
232 |
Q |
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| T |
3879444 |
ggcgtactgtcgcaagtatgtttctgcttcat |
3879475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 3865264 - 3865493
Alignment:
| Q |
1 |
tcaatggctgcaatagctcatggctctatgttggaggtattttatctgtcccagattttgatattaatgacatgtctgaattcatgaggattacgattaa |
100 |
Q |
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|||||||||||||||||||| | |||||||||||||||| |||| ||| |||||| |||||||||| ||| ||||||||||| ||| |||| || | |
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| T |
3865264 |
tcaatggctgcaatagctcacagttctatgttggaggtatgttatttgttccagatattgatattaacgacttgtctgaattcccgagtattaggacgag |
3865363 |
T |
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| Q |
101 |
tccattttgtcaccccgccaatgcaggttttgtaactccgcagttgcagtctattgacttaagcgtcgttggatcttccacgtttgaagaatattagatt |
200 |
Q |
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| T |
3865364 |
tacatgacataact--gccaatgcaggttttggagcttgacaattgcagtctattgacttcggtgtcgttggatcttccacgtttgcagaatattagatt |
3865461 |
T |
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| Q |
201 |
ggcgtactgtcgcaagtatgtttctgcttcat |
232 |
Q |
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| T |
3865462 |
ggtgtactgtcgcaagtatgtttctgcttcat |
3865493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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