View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11746_low_6 (Length: 701)
Name: NF11746_low_6
Description: NF11746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11746_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 406; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 70 - 515
Target Start/End: Complemental strand, 21073686 - 21073242
Alignment:
| Q |
70 |
cactggttctgatgattttctggatttggatttgatatttggttctgatgatttcctagatgtggagttggttactgcatctgttgatttcttcgatgaa |
169 |
Q |
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| T |
21073686 |
cactggttctgatgattttctggatttggatttgatatttggttttgatgatttcctagatgtggagttggttactgcatctgttgatttcttcgatgaa |
21073587 |
T |
|
| Q |
170 |
gattttgttcggtggtgatgacggcgatgctggtggcattcgtgctcgtagttgcgatcctggtgacagtcgtggtggtcatacttacaagctatgccat |
269 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
21073586 |
gattttgttcggtggtgatgacggcgatactggtggcattcgtgctcgtagtcgcgatcctggtgacggtcgtggtggtcatacttaca-gctatgccat |
21073488 |
T |
|
| Q |
270 |
cgtgttcaggtccagagtggtgatctgattttcttttggtcggacgcggtggttcaacttcacggtgagttgaatccggggacggccgttctgaacggtg |
369 |
Q |
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| T |
21073487 |
cgtgttcaggttcagagtggtgatctgattttcttttggtcggacgcggtggttcaacttcacggtgagttgaatccggggacggccgttctgaacggtg |
21073388 |
T |
|
| Q |
370 |
acagtgttgacgatcatcacttcctgaagacggcagaattgatttctgcaacaaaatagaaattataactacatttatcacgacatcatccctaaagtgg |
469 |
Q |
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| T |
21073387 |
acagtgttgatgatcatcacttcctgaagacggcagaattgatttctgcaacaaaatagaaattataactacatttatcacgacatcatccctaaagtgg |
21073288 |
T |
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| Q |
470 |
tgtaattatcaatgcaaatcaccaaatcatttctgcaaacaaattg |
515 |
Q |
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| T |
21073287 |
tgtgattatcaatgcaaatcaccaaattatttctgcaaacaaattg |
21073242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 577 - 684
Target Start/End: Complemental strand, 21073180 - 21073073
Alignment:
| Q |
577 |
gctaacctgcataatgtctcgctcttcatgaaatggatatttacatgtcactttgagcaaggcagtaatctacctgtcgttttagtcttggaaacctgca |
676 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||| ||||| |
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| T |
21073180 |
gctaacctgcataatgtctcgctcttcatgaaatggatatttacatgtcactttgagcaaggcagtaatatgcctctcgttttagtcttggaaatctgca |
21073081 |
T |
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| Q |
677 |
tcccatat |
684 |
Q |
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|||||||| |
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| T |
21073080 |
tcccatat |
21073073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 6 - 74
Target Start/End: Complemental strand, 21073878 - 21073810
Alignment:
| Q |
6 |
tccaaccgtcccctttctaatgcaacaaaataaacatgtgcattaaatggacttttcactgagacactg |
74 |
Q |
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||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21073878 |
tccaaccatcctctttctaatgcaacaaaataaacatgtgcattaaatggacttttcactgagacactg |
21073810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 145; Significance: 6e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 70 - 424
Target Start/End: Complemental strand, 41569401 - 41569050
Alignment:
| Q |
70 |
cactggttctgatgattttctggatttggatttgatatttggttctgatgatttcctagatgtggagttggttactgcatctgttgatttcttcgatgaa |
169 |
Q |
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||||||||| |||||||||||||| ||||||||||||| |||||| ||||| |||||||||||||| ||||| |||| ||||||||||||||| || || |
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| T |
41569401 |
cactggttcagatgattttctggacttggatttgatatctggttccgatgacttcctagatgtggatttggtgactggatctgttgatttcttggacgac |
41569302 |
T |
|
| Q |
170 |
gattttgttcggtggtgatgacggcgatgctggtggcattcgtgctcgtagttgcgatcctggtgacagtcgtggtggtcatacttacaagctatgccat |
269 |
Q |
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| || ||||||||||||||||||||| |||||||| | ||||||||||||| |||||||||||||| ||| |||| ||| || | | | || || | | |
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| T |
41569301 |
gcttctgttcggtggtgatgacggcggtgctggtgacggtcgtgctcgtagtcgcgatcctggtgacggtcatggtagtcgtagtctcgatctctgtctt |
41569202 |
T |
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| Q |
270 |
cgtgttcaggtccagagtggtgatctgattttcttttggtcggacgcggtggttcaacttcacggtgagttgaatccggggacggccgttctgaacggtg |
369 |
Q |
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|| |||| || |||| ||||||||||||||||||||| |||||||||||||||||||||||||| | |||||| || || ||||||||||||||||| |
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| T |
41569201 |
cgcgttcgcgttcaga---gtgatctgattttcttttggttggacgcggtggttcaacttcacggtgggatgaatctggcgatggccgttctgaacggtg |
41569105 |
T |
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| Q |
370 |
acagtgttgacgatcatcacttcctgaagacggcagaattgatttctgcaacaaa |
424 |
Q |
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|| || |||| ||| ||| ||| |||||||||| |||||| ||||||||||||| |
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| T |
41569104 |
acggttttgatgataatcgcttgctgaagacggtggaattggtttctgcaacaaa |
41569050 |
T |
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